iThree Institute, University of Technology Sydney, Ultimo, NSW 2007, Australia.
School of Life and Environmental Sciences, University of Sydney, NSW 2006, Australia.
Microb Genom. 2021 Mar;7(3). doi: 10.1099/mgen.0.000548. Epub 2021 Mar 22.
is a successful opportunistic pathogen that can compete for iron under iron-limiting conditions. Here, large novel transposons that carry genes for synthesis and transport of the fimsbactin siderophores present in some strains were examined. Tn, originally found in the global clone 1 (GC1) lineage 2 isolate D36, includes genes encoding proteins related to the TnsA, TnsB, TnsC transposition proteins (50-59 % identity), TnsD targeting protein (43 % identity) and TnsE (31 % identity) of Tn, and is found in the chromosome downstream of the gene, the preferred location for Tn, flanked by a 5 bp target site duplication. Tn is bounded by 29 bp inverted repeats and, like Tn, includes additional TnsB binding sites at each end. Tn or minor variants were detected in the equivalent location in complete or draft genomes of several further isolates belonging to GC1 [sequence type (ST) 1, ST81, ST94, ST328, ST623, ST717], GC2 (ST2) and ST10. However, in some of these isolates the surrounding region was clearly derived from a different lineage, indicating that the transposon may have been acquired by replacement of a segment of the chromosome. A recombination-free phylogeny revealed that there were several transposon acquisition events in GC1. The GC1 isolates were mainly lineage 2, but a potential third lineage was also detected. A related transposon, designated Tn, was detected in ATCC 17978 (ST437) and other ST437 isolates. However, the Tn targeting gene was interrupted by an ISAba12, and Tn is not downstream of .
是一种成功的机会性病原体,能够在缺铁条件下竞争铁。在这里,研究了一些 菌株中携带合成和运输 fimsbactin siderophore 基因的大型新型转座子。Tn 最初在全球克隆 1(GC1)谱系 2 分离株 D36 中发现,包含编码与 TnsA、TnsB、TnsC 转位蛋白(50-59% 同一性)、TnsD 靶向蛋白(43% 同一性)和 TnsE(31% 同一性)相关蛋白的 基因,位于 基因的染色体下游,这是 Tn 的首选位置,两侧是 5bp 的靶位重复。Tn 由 29bp 反向重复序列包围,与 Tn 一样,在每个末端还包含额外的 TnsB 结合位点。Tn 或其较小变体在属于 GC1(序列类型 [ST] 1、ST81、ST94、ST328、ST623、ST717)、GC2(ST2)和 ST10 的几个进一步 分离株的完整或草图基因组中,在等效位置检测到。然而,在其中一些分离株中,周围的 区域显然来自不同的 谱系,表明转座子可能通过染色体片段的替换而获得。无重组系统发育树表明,GC1 中发生了几次转座子获得事件。GC1 分离株主要是谱系 2,但也检测到潜在的第三个谱系。在 ATCC 17978(ST437)和其他 ST437 分离株中检测到了一个相关的转座子,命名为 Tn。然而,Tn 靶向基因被 ISAba12 中断,并且 Tn 不在 下游。