Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.
J Phys Chem B. 2021 Apr 1;125(12):3080-3091. doi: 10.1021/acs.jpcb.0c10839. Epub 2021 Mar 24.
Coacervates are a type of liquid-liquid phase separated (LLPS) droplets that can serve as models of membraneless organelles (MLOs) in living cells. Peptide-nucleotide coacervates have been widely used to mimic properties of ribonucleoprotein (RNP) granules, but the thermal stability and the role of base stacking is still poorly understood. Here, we report a systematic investigation of coacervates formed by five different nucleoside triphosphates (NTPs) with poly-l-lysine and poly-l-arginine as a function of temperature. All studied combinations exhibit an upper critical solution temperature (UCST), and a temperature-dependent critical salt concentration, originating from a significant nonelectrostatic contribution to the mixing free energy. Both the enthalpic and entropic parts of this nonelectrostatic interaction decrease in the order G/A/U/C/T, in accordance with nucleobase stacking free energies. Partitioning of two dyes proves that the local hydrophobicity inside the peptide-nucleotide coacervates is different for every nucleoside triphosphate. We derive a simple relation between the temperature and salt concentration at the critical point based on a mean-field model of phase separation. Finally, when different NTPs are mixed with one common oppositely charged peptide, hybrid coacervates were formed, characterized by a single intermediate UCST and critical salt concentration. NTPs with lower critical salt concentrations can remain condensed in mixed coacervates far beyond their original critical salt concentration. Our results show that NTP-based coacervates have a strong temperature sensitivity due to base stacking interactions and that mixing NTPs can significantly influence the stability of condensates and, by extension, their bioavailability.
凝聚物是一种液-液相分离 (LLPS) 的液滴,可用作活细胞中无膜细胞器 (MLO) 的模型。肽-核苷酸凝聚物已广泛用于模拟核糖核蛋白 (RNP) 颗粒的性质,但热稳定性和碱基堆积的作用仍知之甚少。在这里,我们报告了对由聚赖氨酸和聚精氨酸与五种不同核苷三磷酸 (NTP) 形成的凝聚物的系统研究,作为温度的函数。所有研究的组合都表现出上临界溶液温度 (UCST) 和与温度相关的临界盐浓度,这源于对混合自由能的非静电贡献很大。这种非静电相互作用的焓和熵部分都按 G/A/U/C/T 的顺序减小,与核碱基堆积自由能一致。两种染料的分配证明了在肽-核苷酸凝聚物内部局部疏水性因每种核苷三磷酸而不同。我们根据相分离的平均场模型推导出临界点处温度和盐浓度之间的简单关系。最后,当不同的 NTP 与一种常见的带相反电荷的肽混合时,形成了杂凝聚物,其特征是单个中间 UCST 和临界盐浓度。具有较低临界盐浓度的 NTP 可以在混合凝聚物中保持凝聚状态,远远超出其原始临界盐浓度。我们的结果表明,基于 NTP 的凝聚物由于碱基堆积相互作用具有很强的温度敏感性,并且混合 NTP 可以显着影响凝聚物的稳定性,进而影响其生物利用度。