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如何设计国家基因组项目——对正在进行的项目的系统评价。

How to design a national genomic project-a systematic review of active projects.

机构信息

Clinical Institute of Genomic Medicine, University Medical Centre Ljubljana, Slajmerjeva 4, Ljubljana, Slovenia.

出版信息

Hum Genomics. 2021 Mar 24;15(1):20. doi: 10.1186/s40246-021-00315-6.

Abstract

An increasing number of countries are investing efforts to exploit the human genome, in order to improve genetic diagnostics and to pave the way for the integration of precision medicine into health systems. The expected benefits include improved understanding of normal and pathological genomic variation, shorter time-to-diagnosis, cost-effective diagnostics, targeted prevention and treatment, and research advances.We review the 41 currently active individual national projects concerning their aims and scope, the number and age structure of included subjects, funding, data sharing goals and methods, and linkage with biobanks, medical data, and non-medical data (exposome). The main aims of ongoing projects were to determine normal genomic variation (90%), determine pathological genomic variation (rare disease, complex diseases, cancer, etc.) (71%), improve infrastructure (59%), and enable personalized medicine (37%). Numbers of subjects to be sequenced ranges substantially, from a hundred to over a million, representing in some cases a significant portion of the population. Approximately half of the projects report public funding, with the rest having various mixed or private funding arrangements. 90% of projects report data sharing (public, academic, and/or commercial with various levels of access) and plan on linking genomic data and medical data (78%), existing biobanks (44%), and/or non-medical data (24%) as the basis for enabling personal/precision medicine in the future.Our results show substantial diversity in the analysed categories of 41 ongoing national projects. The overview of current designs will hopefully inform national initiatives in designing new genomic projects and contribute to standardisation and international collaboration.

摘要

越来越多的国家正在努力开发人类基因组,以改善遗传诊断,并为将精准医学纳入医疗体系铺平道路。预期的好处包括更好地理解正常和病理性基因组变异,缩短诊断时间,降低诊断成本,实现靶向预防和治疗,以及推进研究。我们对目前正在进行的 41 个国家项目进行了回顾,分析了它们的目标和范围、纳入的研究对象数量和年龄结构、资金、数据共享目标和方法,以及与生物库、医疗数据和非医疗数据(外显子组)的联系。正在进行的项目的主要目的是确定正常的基因组变异(90%)、确定病理性基因组变异(罕见病、复杂疾病、癌症等)(71%)、改善基础设施(59%)和实现个性化医疗(37%)。纳入的研究对象数量从几百到上百万不等,在某些情况下,这代表了相当一部分人口。大约一半的项目报告有公共资金,其余项目则有各种混合或私人资金安排。90%的项目报告了数据共享(公共、学术和/或商业,具有不同的访问级别),并计划将基因组数据和医疗数据(78%)、现有的生物库(44%)和/或非医疗数据(24%)联系起来,为未来实现个人/精准医学提供基础。我们的结果显示,正在进行的 41 个国家项目在分析类别中存在很大的多样性。对现有设计的概述有望为国家制定新的基因组项目提供信息,并有助于标准化和国际合作。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cfb/7992326/96a10c0047e7/40246_2021_315_Fig1_HTML.jpg

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