Kim Suyeon, Chung Han Young, Kwon Joon-Gi, Choi Sang Ho, Lee Ju-Hoon
National Research Laboratory of Molecular Microbiology and Toxicology, Department of Food and Animal Biotechnology, Department of Agricultural Biotechnology, Center for Food and Bioconvergence, Seoul National University, Seoul, South Korea.
Food Microbiome Laboratory, Department of Food and Animal Biotechnology, Department of Agricultural Biotechnology, Center for Food and Bioconvergence, Seoul National University, Seoul, South Korea.
Front Microbiol. 2021 Mar 9;12:645860. doi: 10.3389/fmicb.2021.645860. eCollection 2021.
is a well-known opportunistic pathogen causing food-borne illnesses by ingestion of contaminated seafood. A new strain of FORC_016 was isolated from a patient's blood sample in South Korea. The genome consists of two circular DNA chromosomes: chromosome I (3,234,424 bp with a G + C contents of 46.60% containing 2,889 ORFs, 106 tRNA genes, and 31 rRNA genes) and chromosome II (1,837,945 bp with a GC content of 47.00% containing 1,572 ORFs, 13 tRNA genes, and 3 rRNA genes). In addition, chromosome I has a super integron (SI) containing 209 ORFs, which is probably associated with various additional functions including antibiotic resistance and pathogenicity. Pan-genome analysis with other genomes revealed that core genome regions contain most of the important virulence factors. However, accessory genome regions are located in the SI region and contain unique genes regarding cell wall biosynthesis and generation of host cell protecting capsule, suggesting possible resistance ability against environmental stresses. Comparative RNA-Seq analysis of samples between contact and no contact to the crab conditions showed that expressions of amino acid/peptide and carbohydrate transport and utilization genes were down-regulated, but expressions of cell division and growth-related genes were up-regulated, suggesting that the crab may be a nutrition reservoir for rapid propagation of . Therefore, consumption of the contaminated fresh crab would provide a large number of to humans, which may be more dangerous. Consequently, biocontrol of may be critical to ensure the safety in seafood consumption.
是一种通过摄入受污染的海鲜导致食源性疾病的著名机会性病原体。在韩国,从一名患者的血样中分离出了一种新的FORC_016菌株。该基因组由两条环状DNA染色体组成:染色体I(3,234,424 bp,G + C含量为46.60%,包含2,889个开放阅读框、106个tRNA基因和31个rRNA基因)和染色体II(1,837,945 bp,GC含量为47.00%,包含1,572个开放阅读框、13个tRNA基因和3个rRNA基因)。此外,染色体I有一个包含209个开放阅读框的超级整合子(SI),这可能与包括抗生素抗性和致病性在内的各种附加功能有关。与其他基因组的泛基因组分析表明,核心基因组区域包含了大多数重要的毒力因子。然而,辅助基因组区域位于SI区域,包含关于细胞壁生物合成和宿主细胞保护荚膜生成的独特基因,表明可能具有抵抗环境压力的能力。对接触和未接触螃蟹条件下的样本进行比较RNA测序分析表明,氨基酸/肽和碳水化合物运输及利用基因的表达下调,但细胞分裂和生长相关基因的表达上调,这表明螃蟹可能是该菌快速繁殖的营养库。因此,食用受污染的新鲜螃蟹会给人类提供大量该菌,这可能更危险。因此,对该菌进行生物防治对于确保海鲜消费安全可能至关重要。