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东亚特有属的质体基因组系统发育学

Plastome phylogenomics of the East Asian endemic genus .

作者信息

Liu Changkun, Yang Jin, Jin Lei, Wang Shuying, Yang Zhenyan, Ji Yunheng

机构信息

CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, 650201, China.

School of Life Science, Yunnan University, Kunming, 650091, China.

出版信息

Plant Divers. 2020 May 29;43(1):35-42. doi: 10.1016/j.pld.2020.05.002. eCollection 2021 Feb.

Abstract

is a dioecious genus endemic to East Asia that consists of two extant species: and . Although the genus is morphologically distinct, its phylogenetic position remains controversial. In this study, we investigated the phylogenetic relationships between and related taxa by sequencing the whole plastome DNA sequences for both extant species of and comparing them to published plastomes within Sapindales. The complete plastomes of and were 160,683 and 160, 154 base pairs (bp) in length, including a pair of inverted repeat regions (IRs, 26,889 and 26,759 bp) divided by the large single-copy region (LSC, 87,962 and 87,555 bp) and small single-copy region (SSC, 18,943 and 19,081 bp), and identically encoded 113 unique genes (79 protein-coding genes, 30 tRNAs, and 4 rRNA genes). Plastid phylogenomic analyses showed that was a well-supported monophyletic unit and sister to the clade including tribes Anacardieae and Rhoideae, which suggests that is a member of Anacardiaceae. In addition, molecular dating inferred and diverged approximately 10.76 Ma, suggesting the divergence between these two species may have been driven by the intensification of the Asian summer monsoon and the establishment of distinct monsoon regimes in East Asia.

摘要

是东亚特有的雌雄异株属,由两个现存物种组成: 和 。尽管该属在形态上有明显区别,但其系统发育位置仍存在争议。在本研究中,我们通过对 两个现存物种的整个质体基因组DNA序列进行测序,并将其与无患子目内已发表的质体基因组进行比较,研究了 与相关类群之间的系统发育关系。 和 的完整质体基因组长度分别为160,683和160,154碱基对(bp),包括一对由大单拷贝区域(LSC,87,962和87,555 bp)和小单拷贝区域(SSC,18,943和19,081 bp)分隔的反向重复区域(IRs,26,889和26,759 bp),并同样编码113个独特基因(79个蛋白质编码基因、30个tRNA和4个rRNA基因)。质体系统发育基因组分析表明, 是一个得到充分支持的单系类群,是包括漆树族和盐肤木族在内的分支的姐妹类群,这表明 是漆树科的一个成员。此外,分子年代测定推断 和 在大约1076万年前分化,这表明这两个物种之间的分化可能是由亚洲夏季风的增强和东亚独特季风模式的建立所驱动的。

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