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小分子的微晶体电子衍射。

Microcrystal Electron Diffraction of Small Molecules.

机构信息

Howard Hughes Medical Institute, University of California Los Angeles; Department of Biological Chemistry, University of California Los Angeles.

Howard Hughes Medical Institute, University of California Los Angeles; Department of Biological Chemistry, University of California Los Angeles; Department of Physiology, University of California Los Angeles;

出版信息

J Vis Exp. 2021 Mar 15(169). doi: 10.3791/62313.

DOI:10.3791/62313
PMID:33779618
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9974888/
Abstract

A detailed protocol for preparing small molecule samples for microcrystal electron diffraction (MicroED) experiments is described. MicroED has been developed to solve structures of proteins and small molecules using standard electron cryo-microscopy (cryo-EM) equipment. In this way, small molecules, peptides, soluble proteins, and membrane proteins have recently been determined to high resolutions. Protocols are presented here for preparing grids of small-molecule pharmaceuticals using the drug carbamazepine as an example. Protocols for screening and collecting data are presented. Additional steps in the overall process, such as data integration, structure determination, and refinement are presented elsewhere. The time required to prepare the small-molecule grids is estimated to be less than 30 min.

摘要

描述了一种用于将小分子样品制备用于微晶体电子衍射(MicroED)实验的详细方案。MicroED 已经被开发出来,以便使用标准的电子冷冻显微镜(cryo-EM)设备来解决蛋白质和小分子的结构问题。通过这种方式,小分子、肽、可溶性蛋白质和膜蛋白最近已经被确定具有高分辨率。这里提供了使用药物卡马西平作为示例来制备小分子药物的网格的方案。还介绍了筛选和收集数据的方案。整个过程中的其他步骤,如数据集成、结构确定和精修,在其他地方介绍。估计准备小分子网格所需的时间少于 30 分钟。

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Comprehensive microcrystal electron diffraction sample preparation for cryo-EM.用于冷冻电子显微镜的综合微晶电子衍射样品制备

本文引用的文献

1
MicroED structure of the human adenosine receptor determined from a single nanocrystal in LCP.从 LCP 中的单个纳米晶体测定的人腺苷受体的 MicroED 结构。
Proc Natl Acad Sci U S A. 2021 Sep 7;118(36). doi: 10.1073/pnas.2106041118.
2
MicroED structure of lipid-embedded mammalian mitochondrial voltage-dependent anion channel.脂质嵌入的哺乳动物线粒体电压依赖性阴离子通道的 MicroED 结构。
Proc Natl Acad Sci U S A. 2020 Dec 22;117(51):32380-32385. doi: 10.1073/pnas.2020010117. Epub 2020 Dec 8.
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Ligand Incorporation into Protein Microcrystals for MicroED by On-Grid Soaking.
Nat Protoc. 2025 May;20(5):1275-1309. doi: 10.1038/s41596-024-01088-7. Epub 2024 Dec 20.
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Advances and applications of microcrystal electron diffraction (MicroED).微晶体电子衍射(MicroED)的进展与应用。
Curr Opin Struct Biol. 2024 Feb;84:102741. doi: 10.1016/j.sbi.2023.102741. Epub 2023 Dec 11.
5
Recent Developments Toward Integrated Metabolomics Technologies (UHPLC-MS-SPE-NMR and MicroED) for Higher-Throughput Confident Metabolite Identifications.用于高通量可靠代谢物鉴定的集成代谢组学技术(超高效液相色谱-质谱-固相萃取-核磁共振和微电子衍射)的最新进展
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配体通过网格浸泡法整合到蛋白微晶体中用于微束衍射。
Structure. 2021 Jan 7;29(1):88-95.e2. doi: 10.1016/j.str.2020.09.003. Epub 2020 Oct 1.
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Tailoring Tryptophan Synthase TrpB for Selective Quaternary Carbon Bond Formation.定制色氨酸合酶 TrpB 以选择性形成季碳原子键。
J Am Chem Soc. 2019 Dec 18;141(50):19817-19822. doi: 10.1021/jacs.9b09864. Epub 2019 Dec 6.
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MicroED with the Falcon III direct electron detector.配备Falcon III直接电子探测器的微晶电子衍射技术。
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6
Qualitative Analyses of Polishing and Precoating FIB Milled Crystals for MicroED.用于微 ED 的 FIB 铣削晶体的抛光和预涂的定性分析。
Structure. 2019 Oct 1;27(10):1594-1600.e2. doi: 10.1016/j.str.2019.07.004. Epub 2019 Aug 15.
7
Use of a scaffold peptide in the biosynthesis of amino acid-derived natural products.支架肽在氨基酸衍生天然产物生物合成中的应用。
Science. 2019 Jul 19;365(6450):280-284. doi: 10.1126/science.aau6232.
8
Software tools for automated transmission electron microscopy.用于自动透射电子显微镜的软件工具。
Nat Methods. 2019 Jun;16(6):471-477. doi: 10.1038/s41592-019-0396-9. Epub 2019 May 13.
9
MicroED data collection with SerialEM.使用 SerialEM 进行微电子断层扫描数据采集。
Ultramicroscopy. 2019 Jun;201:77-80. doi: 10.1016/j.ultramic.2019.03.009. Epub 2019 Mar 19.
10
Collection of Continuous Rotation MicroED Data from Ion Beam-Milled Crystals of Any Size.从任何尺寸的离子束铣削晶体中收集连续旋转微 ED 数据。
Structure. 2019 Mar 5;27(3):545-548.e2. doi: 10.1016/j.str.2018.12.003. Epub 2019 Jan 17.