Fan Tingting, Wang Muyao, Li Jun, Wang Fenglou, Zhang Zhang, Zhao Xin-Qing
State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
JALA Group. Co., Ltd., Shanghai 200233, China.
Sheng Wu Gong Cheng Xue Bao. 2021 Mar 25;37(3):806-815. doi: 10.13345/j.cjb.200650.
Yeast are comprised of diverse single-cell fungal species including budding yeast Saccharomyces cerevisiae and various nonconventional yeasts. Budding yeast is well known as an important industrial microorganism, which has been widely applied in various fields, such as biopharmaceutical and health industry, food, light industry and biofuels production. In the recent years, various yeast strains from different ecological environments have been isolated and characterized. Novel species have been continuously identified, and strains with diverse physiological characteristics such as stress resistance and production of bioactive compounds were selected, which proved abundant biodiversity of natural yeast resources. Genome mining of yeast strains, as well as multi-omics analyses (transcriptome, proteome and metabolome, etc.) can reveal diverse genetic diversity for strain engineering. The genetic resources including genes encoding various enzymes and regulatory proteins, promoters, and other elements, can be employed for development of robust strains. In addition to exploration of yeast natural diversity, phenotypes that are more suitable for industrial applications can be obtained by generation of a variety of genetic diversity through mutagenesis, laboratory adaptation, metabolic engineering, and synthetic biology design. The optimized genetic elements can be used to efficiently improve strain performance. Exploration of yeast biodiversity and genetic diversity can be employed to build efficient cell factories and produce biological enzymes, vaccines, various natural products as well as other valuable products. In this review, progress on yeast diversity is summarized, and the future prospects on efficient development and utilization of yeast biodiversity are proposed. The methods and schemes described in this review also provide a reference for exploration of diversity of other industrial microorganisms and development of efficient strains.
酵母由多种单细胞真菌物种组成,包括出芽酵母酿酒酵母和各种非常规酵母。出芽酵母是一种著名的重要工业微生物,已广泛应用于生物制药与健康产业、食品、轻工业和生物燃料生产等各个领域。近年来,已从不同生态环境中分离并鉴定了各种酵母菌株。新物种不断被发现,同时筛选出了具有多种生理特性(如抗逆性和生物活性化合物生产能力)的菌株,这证明了天然酵母资源具有丰富的生物多样性。对酵母菌株进行基因组挖掘以及多组学分析(转录组、蛋白质组和代谢组等)可以揭示菌株工程中多样的遗传多样性。包括编码各种酶和调节蛋白的基因、启动子及其他元件在内的遗传资源可用于构建优良菌株。除了探索酵母的自然多样性外,还可以通过诱变、实验室适应性进化、代谢工程和合成生物学设计产生各种遗传多样性,从而获得更适合工业应用的表型。优化后的遗传元件可用于有效提高菌株性能。探索酵母的生物多样性和遗传多样性可用于构建高效细胞工厂,并生产生物酶、疫苗、各种天然产物以及其他有价值的产品。在本综述中,总结了酵母多样性方面的进展,并对酵母生物多样性的高效开发和利用提出了未来展望。本综述中描述的方法和方案也为探索其他工业微生物的多样性和开发高效菌株提供了参考。