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Improved metagenomic analysis with Kraken 2.Kraken 2 提升宏基因组分析。
Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0.
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fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.MEGAHIT：通过简洁的 de Bruijn 图实现的超快速单节点解决方案，适用于大型和复杂的宏基因组组装。
Bioinformatics. 2015 May 15;31(10):1674-6. doi: 10.1093/bioinformatics/btv033. Epub 2015 Jan 20.
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Coagulase-negative staphylococci.凝固酶阴性葡萄球菌
Clin Microbiol Rev. 2014 Oct;27(4):870-926. doi: 10.1128/CMR.00109-13.
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Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
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Multilocus sequence typing of total-genome-sequenced bacteria.全基因组测序细菌的多位点序列分型。
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来自新生儿血样的三株表皮葡萄球菌菌株的基因组序列草图及抗菌谱

Draft Genome Sequences and Antimicrobial Profiles of Three Staphylococcus epidermidis Strains from Neonatal Blood Samples.

作者信息

Afeke Innocent, Moustafa Ahmed, Hirose Misa, Becker Mareike, Busch Hauke, Kuenstner Axel, Faehnrich Anke, Ablordey Anthony S, Haertel Christoph, Amega-Aho Kokou Hefoume, Badr Mohamed Tarek, Rupp Jan, Ibrahim Saleh

机构信息

Luebeck Institute for Experimental Dermatology, University of Luebeck, Luebeck, Germany

Department of Medical Laboratory Sciences, School of Allied Health Sciences, University of Health and Allied Sciences, Ho, Ghana.

出版信息

Microbiol Resour Announc. 2021 Apr 1;10(13):e00170-21. doi: 10.1128/MRA.00170-21.

DOI:10.1128/MRA.00170-21
PMID:33795343
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8104051/
Abstract

Data on molecular characterization of coagulase-negative staphylococci causing neonatal sepsis in low-income countries are highly limited. This report highlights the isolation of three non-genome assembly strains (NGASs) from blood samples from neonates with unknown transmission sources. Pathogenic factors and sources of transmission of these strains warrant further investigation.

摘要

关于低收入国家引起新生儿败血症的凝固酶阴性葡萄球菌分子特征的数据非常有限。本报告强调了从传播来源不明的新生儿血样中分离出三株非基因组组装菌株（NGASs）。这些菌株的致病因素和传播来源值得进一步研究。