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基于 RNA 测序数据的人浆细胞分化解析揭示新的潜在转录调控因子。

RNA-sequencing data-driven dissection of human plasma cell differentiation reveals new potential transcription regulators.

机构信息

Department of Biological Hematology, CHU Montpellier, Montpellier, France.

IGH, CNRS, University of Montpellier, Montpellier, France.

出版信息

Leukemia. 2021 May;35(5):1451-1462. doi: 10.1038/s41375-021-01234-0. Epub 2021 Apr 6.


DOI:10.1038/s41375-021-01234-0
PMID:33824465
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8102200/
Abstract

Plasma cells (PCs) play an important role in the adaptive immune system through a continuous production of antibodies. We have demonstrated that PC differentiation can be modeled in vitro using complex multistep culture systems reproducing sequential differentiation process occurring in vivo. Here we present a comprehensive, temporal program of gene expression data encompassing human PC differentiation (PCD) using RNA sequencing (RNA-seq). Our results reveal 6374 differentially expressed genes classified into four temporal gene expression patterns. A stringent pathway enrichment analysis of these gene clusters highlights known pathways but also pathways largely unknown in PCD, including the heme biosynthesis and the glutathione conjugation pathways. Additionally, our analysis revealed numerous novel transcriptional networks with significant stage-specific overexpression and potential importance in PCD, including BATF2, BHLHA15/MIST1, EZH2, WHSC1/MMSET, and BLM. We have experimentally validated a potent role for BLM in regulating cell survival and proliferation during human PCD. Taken together, this RNA-seq analysis of PCD temporal stages helped identify coexpressed gene modules with associated up/downregulated transcription regulator genes that could represent major regulatory nodes for human PC maturation. These data constitute a unique resource of human PCD gene expression programs in support of future studies for understanding the underlying mechanisms that control PCD.

摘要

浆细胞(PCs)通过持续产生抗体在适应性免疫系统中发挥重要作用。我们已经证明,使用复制体内发生的连续分化过程的复杂多步培养系统,可以在体外模拟 PC 分化。在这里,我们使用 RNA 测序(RNA-seq)呈现了涵盖人类 PC 分化(PCD)的综合、时间性基因表达数据方案。我们的结果揭示了 6374 个差异表达基因,分为四个时间基因表达模式。对这些基因簇的严格途径富集分析突出了已知途径,但也突出了 PCD 中很大程度上未知的途径,包括血红素生物合成和谷胱甘肽缀合途径。此外,我们的分析还揭示了许多具有重要阶段特异性过表达的新型转录网络,以及在 PCD 中可能具有重要意义的新型转录网络,包括 BATF2、BHLHA15/MIST1、EZH2、WHSC1/MMSET 和 BLM。我们已经通过实验验证了 BLM 在调节人类 PCD 期间细胞存活和增殖中的强大作用。总之,这项对 PCD 时间阶段的 RNA-seq 分析有助于确定具有相关上调/下调转录调节基因的共表达基因模块,这些基因可能代表人类 PC 成熟的主要调节节点。这些数据构成了人类 PCD 基因表达程序的独特资源,支持未来研究理解控制 PCD 的潜在机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/47d994674745/41375_2021_1234_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/e7f71b2e6d82/41375_2021_1234_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/8393ead48c2d/41375_2021_1234_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/7b723f75a189/41375_2021_1234_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/2c82b633ea05/41375_2021_1234_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/33d30f0575d3/41375_2021_1234_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/0998072a6c50/41375_2021_1234_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/47d994674745/41375_2021_1234_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/e7f71b2e6d82/41375_2021_1234_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/8393ead48c2d/41375_2021_1234_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/7b723f75a189/41375_2021_1234_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/2c82b633ea05/41375_2021_1234_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/33d30f0575d3/41375_2021_1234_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/0998072a6c50/41375_2021_1234_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94de/8102200/47d994674745/41375_2021_1234_Fig7_HTML.jpg

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