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脂肪酸光脱羧酶的作用机制与动力学。

Mechanism and dynamics of fatty acid photodecarboxylase.

机构信息

Aix-Marseille University, CEA, CNRS, Institute of Biosciences and Biotechnologies, BIAM Cadarache, 13108 Saint-Paul-lez-Durance, France.

Université Grenoble Alpes, CEA, CNRS, Institut de Biologie Structurale, 38000 Grenoble, France.

出版信息

Science. 2021 Apr 9;372(6538). doi: 10.1126/science.abd5687.

Abstract

Fatty acid photodecarboxylase (FAP) is a photoenzyme with potential green chemistry applications. By combining static, time-resolved, and cryotrapping spectroscopy and crystallography as well as computation, we characterized FAP reaction intermediates on time scales from subpicoseconds to milliseconds. High-resolution crystal structures from synchrotron and free electron laser x-ray sources highlighted an unusual bent shape of the oxidized flavin chromophore. We demonstrate that decarboxylation occurs directly upon reduction of the excited flavin by the fatty acid substrate. Along with flavin reoxidation by the alkyl radical intermediate, a major fraction of the cleaved carbon dioxide unexpectedly transformed in 100 nanoseconds, most likely into bicarbonate. This reaction is orders of magnitude faster than in solution. Two strictly conserved residues, R451 and C432, are essential for substrate stabilization and functional charge transfer.

摘要

脂肪酸脱羧酶(FAP)是一种具有潜在绿色化学应用的光酶。通过结合静态、时间分辨和低温捕集光谱学以及晶体学和计算,我们在从亚皮秒到毫秒的时间尺度上表征了 FAP 反应中间体。来自同步加速器和自由电子激光 X 射线源的高分辨率晶体结构突出了氧化黄素发色团的异常弯曲形状。我们证明脱羧反应直接发生在脂肪酸底物还原激发态黄素时。随着黄素被烷基自由基中间体重新氧化,大部分被切断的二氧化碳在 100 纳秒内意外转化,很可能转化为碳酸氢盐。这种反应比在溶液中快几个数量级。两个严格保守的残基 R451 和 C432 对于底物稳定和功能电荷转移是必不可少的。

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