Department of Biochemistry, Duke University School of Medicine, Durham, NC, USA.
Department of Chemistry, Duke University, Durham, NC, USA.
Curr Opin Struct Biol. 2021 Oct;70:16-25. doi: 10.1016/j.sbi.2021.02.007. Epub 2021 Apr 6.
Nucleic acids do not fold into a single conformation, and dynamic ensembles are needed to describe their propensities to cycle between different conformations when performing cellular functions. We review recent advances in solution-state nuclear magnetic resonance (NMR) methods and their integration with computational techniques that are improving the ability to probe the dynamic ensembles of DNA and RNA. These include computational approaches for predicting chemical shifts from structure and generating conformational libraries from sequence, measurements of exact nuclear Overhauser effects, development of new probes to study chemical exchange using relaxation dispersion, faster and more sensitive real-time NMR techniques, and new NMR approaches to tackle large nucleic acid assemblies. We discuss how these advances are leading to new mechanistic insights into gene expression and regulation.
核酸不会折叠成单一构象,因此需要动态集合来描述它们在执行细胞功能时在不同构象之间循环的倾向。我们回顾了溶液状态核磁共振(NMR)方法的最新进展及其与计算技术的整合,这些技术正在提高探测 DNA 和 RNA 动态集合的能力。这些方法包括从结构预测化学位移和从序列生成构象文库的计算方法、精确核奥弗豪瑟效应的测量、使用弛豫分散研究化学交换的新探针的开发、更快更灵敏的实时 NMR 技术以及解决大型核酸组装体的新 NMR 方法。我们讨论了这些进展如何为基因表达和调控的新机制提供深入了解。