Li Ming, Chen Zhencong, Jiang Tian, Yang Xiaodong, Du Yajing, Liang Jiaqi, Wang Lin, Xi Junjie, Lin Miao, Feng Mingxiang
Department of Thoracic Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200032, People's Republic of China.
Department of Thoracic Surgery, Shanghai Pulmonary Hospital, Tongji University, Shanghai, 200433, People's Republic of China.
J Cancer. 2021 Mar 5;12(9):2582-2597. doi: 10.7150/jca.52454. eCollection 2021.
We aimed to explore the prognostic implication for non-small cell lung cancer (NSCLC) based on the expression profiles of circadian clock-related genes (CCRGs), and describe the changes of immune infiltration and cell functions of related to the circadian rhythm. Univariate and multivariate Cox proportional hazard regression were performed to determine a CCRGs risk-score significantly correlated with overall survival (OS) of the training set and validation set. GO, KEGG, and GSVA indicated discrepant changes in cellular processes and signaling pathways associated with these CCRGs. Immune cell infiltration and mutation rates were investigated by the online analysis platform and the algorithm provided by works of literature. The signature-based on ten-gene signatures could independently predict the OS both in TCGA lung adenocarcinoma ( < 0.001, HR: 1.228, 95% CI: 1.158 to 1.302) and lung squamous cell carcinoma ( < 0.001, HR: 2.501, 95% CI: 2.010 to 3.117), respectively. The circadian oscillations driven by CCRGs could disturb the metabolism and cellular functions of cancer cells. The infiltration level of critical cells in specific anti-tumor immunity process was suppressed apparently. In contrast, the infiltrating of inflammatory cells and immune cells with negative regulatory effects were promoted in the high-risk group. CCRGs were evolutionarily conserved with low mutation rates, which brought difficulties to explore therapeutic targets. We identified and validated a circadian rhythm signature to described clinical relevance and tumor microenvironment of NSCLC, which revealed that circadian rhythms might play an influential role in the NSCLC.
我们旨在基于昼夜节律相关基因(CCRGs)的表达谱探索非小细胞肺癌(NSCLC)的预后意义,并描述与昼夜节律相关的免疫浸润和细胞功能变化。进行单变量和多变量Cox比例风险回归,以确定与训练集和验证集的总生存期(OS)显著相关的CCRGs风险评分。GO、KEGG和GSVA表明与这些CCRGs相关的细胞过程和信号通路存在差异变化。通过在线分析平台和文献作品提供的算法研究免疫细胞浸润和突变率。基于十个基因特征的特征分别可以独立预测TCGA肺腺癌(<0.001,HR:1.228,95%CI:1.158至1.302)和肺鳞状细胞癌(<0.001,HR:2.501,95%CI:2.010至3.117)的OS。由CCRGs驱动的昼夜节律振荡可能会干扰癌细胞的代谢和细胞功能。在特定抗肿瘤免疫过程中关键细胞的浸润水平明显受到抑制。相反,在高危组中促进了具有负调节作用的炎性细胞和免疫细胞的浸润。CCRGs在进化上保守,突变率低,这给探索治疗靶点带来了困难。我们鉴定并验证了一种昼夜节律特征,以描述NSCLC的临床相关性和肿瘤微环境,这表明昼夜节律可能在NSCLC中发挥有影响的作用。