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通过整合线粒体基因组学、标记不一致性和命名规则来解决卤虫(甲壳纲:鳃足亚纲:无甲目)的分类和命名问题。

Settling taxonomic and nomenclatural problems in brine shrimps, (Crustacea: Branchiopoda: Anostraca), by integrating mitogenomics, marker discordances and nomenclature rules.

作者信息

Sainz-Escudero Lucía, López-Estrada E Karen, Rodríguez-Flores Paula Carolina, García-París Mario

机构信息

Museo Nacional de Ciencias Naturales (MNCN-CSIC), Madrid, Spain.

Fundación Global Nature, Las Rozas, Madrid, Spain.

出版信息

PeerJ. 2021 Mar 10;9:e10865. doi: 10.7717/peerj.10865. eCollection 2021.

DOI:10.7717/peerj.10865
PMID:33854829
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7955675/
Abstract

High morphological plasticity in populations of brine shrimp subjected to different environmental conditions, mainly salinity, hindered for centuries the identification of the taxonomic entities encompassed within . In addition, the mismatch between molecular and morphological evolution rates complicates the characterization of evolutionary lineages, generating taxonomic problems. Here, we propose a phylogenetic hypothesis for based on two new complete mitogenomes, and determine levels of congruence in the definition of evolutionary units using nuclear and mtDNA data. We used a fossil of to calibrate the molecular clock and discuss divergence times within the genus. The hypothesis proposed herein suggests a more recent time frame for lineage splitting than previously considered. Phylogeographic analyses were performed using GenBank available mitochondrial and nuclear markers. Evidence of gen e flow, identified through discordances between nuclear and mtDNA markers, was used to reconsider the specific status of some taxa. As a result, we consider to be represented by five evolutionary units: Southern Cone, Mediterranean-South African, New World, Western Asian, and Eastern Asian Lineages. After an exhaustive bibliographical revision, unavailable names for nomenclatural purposes were discarded. The remaining available names have been assigned to their respective evolutionary lineage. The proper names for the evolutionary units in which brine shrimps are structured remain as follows: Piccinelli & Prosdocimi, 1968 for the Southern Cone Lineage, (Linnaeus, 1758) for the Mediterranean-SouthAfrican Lineage, Günther, 1899 for the Western Asian Lineage, and Cai, 1989 for the Eastern Asian Lineage. The name Verrill, 1869 has nomenclatural priority over Kellogg, 1906 for naming the New World Lineage. New synonymies are proposed for ( Grochowski, 1896 , and Bowen & Sterling, 1978 ), (= Kellogg, 1906 ., and var. Sars, 1904 ); (= Fischer de Waldheim, 1834 , Fischer, 1851 , King, 1855 , , Entz, 1886 , Walter, 1887 , Bowen & Sterling, 1978 , Qian & Wang, 1992 , Naganawa, 2017 , and Naganawa & Mura, 2017 ). Internal deep nuclear structuring within the and clades, might suggest the existence of additional evolutionary units within these taxa.

摘要

处于不同环境条件(主要是盐度)下的卤虫种群具有很高的形态可塑性,这几个世纪以来一直阻碍着对其中所包含的分类实体的识别。此外,分子进化速率与形态进化速率之间的不匹配使进化谱系的特征描述变得复杂,从而产生了分类学问题。在此,我们基于两个新的完整线粒体基因组提出了一个关于卤虫的系统发育假说,并利用核DNA和线粒体DNA数据确定进化单元定义中的一致性水平。我们使用卤虫的一个化石来校准分子钟,并讨论该属内的分歧时间。本文提出的假说表明谱系分裂的时间框架比之前认为的更近。使用GenBank中可用的线粒体和核标记进行了系统地理学分析。通过核DNA和线粒体DNA标记之间的不一致所确定的基因流证据,被用于重新考虑一些分类单元的特定地位。结果,我们认为卤虫由五个进化单元代表:南锥体、地中海 - 南非、新世界、西亚和东亚谱系。经过详尽的文献修订,废弃了用于命名目的不可用的名称。其余可用名称已被分配到它们各自的进化谱系中。卤虫所构成的进化单元的合适名称如下:南锥体谱系为Piccinelli & Prosdocimi, 1968,地中海 - 南非谱系为(Linnaeus, 1758),西亚谱系为Günther, 1899,东亚谱系为Cai, 1989。在命名新世界谱系时,Verrill, 1869比Kellogg, 1906具有命名优先权。为卤虫(Grochowski, 1896 以及Bowen & Sterling, 1978)、(= Kellogg, 1906 以及var. Sars, 1904);(= Fischer de Waldheim,

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