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小分子配体与细胞色素 P450 氧化还原酶结合导致的 P450 介导的代谢偏置。

Biased cytochrome P450-mediated metabolism via small-molecule ligands binding P450 oxidoreductase.

机构信息

Department of Chemistry & Nanoscience Centre, University of Copenhagen, Copenhagen Ø, Denmark.

Plant Biochemistry Laboratory, Department of Plant and Environmental Sciences, University of Copenhagen, Copenhagen, Denmark.

出版信息

Nat Commun. 2021 Apr 15;12(1):2260. doi: 10.1038/s41467-021-22562-w.

Abstract

Metabolic control is mediated by the dynamic assemblies and function of multiple redox enzymes. A key element in these assemblies, the P450 oxidoreductase (POR), donates electrons and selectively activates numerous (>50 in humans and >300 in plants) cytochromes P450 (CYPs) controlling metabolism of drugs, steroids and xenobiotics in humans and natural product biosynthesis in plants. The mechanisms underlying POR-mediated CYP metabolism remain poorly understood and to date no ligand binding has been described to regulate the specificity of POR. Here, using a combination of computational modeling and functional assays, we identify ligands that dock on POR and bias its specificity towards CYP redox partners, across mammal and plant kingdom. Single molecule FRET studies reveal ligand binding to alter POR conformational sampling, which results in biased activation of metabolic cascades in whole cell assays. We propose the model of biased metabolism, a mechanism akin to biased signaling of GPCRs, where ligand binding on POR stabilizes different conformational states that are linked to distinct metabolic outcomes. Biased metabolism may allow designing pathway-specific therapeutics or personalized food suppressing undesired, disease-related, metabolic pathways.

摘要

代谢控制是由多种氧化还原酶的动态组装和功能介导的。这些组装中的一个关键元素是细胞色素 P450 氧化还原酶 (POR),它提供电子并选择性地激活许多(人类中超过 50 种,植物中超过 300 种)细胞色素 P450(CYPs),控制人类药物、类固醇和外源生物的代谢以及植物中天然产物的生物合成。POR 介导的 CYP 代谢的机制仍知之甚少,迄今为止,尚未描述任何配体结合来调节 POR 的特异性。在这里,我们使用计算建模和功能测定的组合,鉴定了在哺乳动物和植物王国中与 POR 结合并偏向其对 CYP 氧化还原伴侣特异性的配体。单分子 FRET 研究表明,配体结合会改变 POR 的构象采样,从而导致在全细胞测定中代谢级联的偏向激活。我们提出了偏向代谢的模型,这是一种类似于 GPCR 偏向信号的机制,其中 POR 上的配体结合稳定与不同代谢结果相关的不同构象状态。偏向代谢可能允许设计特定途径的治疗方法或个性化的食物来抑制不需要的、与疾病相关的代谢途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2de2/8050233/f94bc469c307/41467_2021_22562_Fig1_HTML.jpg

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