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有机磷农药生物富集因子的计算机辅助局部定量构效关系建模

In silico local QSAR modeling of bioconcentration factor of organophosphate pesticides.

作者信息

Banjare Purusottam, Matore Balaji, Singh Jagadish, Roy Partha Pratim

机构信息

Department of Pharmacy, Guru GhasidasVishwavidyalaya (A Central University), Bilaspur, 495009 India.

出版信息

In Silico Pharmacol. 2021 Apr 4;9(1):28. doi: 10.1007/s40203-021-00087-w. eCollection 2021.

Abstract

The persistent and accumulative nature of the pesticide of indiscriminate use emerged as ecotoxicological hazards. The bioconcentration factor (BCF) is one of the key elements for environmental assessments of the aquatic compartment. Limitations of prediction accuracy of global model facilitate the use of local predictive models in toxicity modeling of emerging compounds. The BCF data of diverse organophosphate (n = 55) was collected from the Pesticide Properties Database and used as a model data set in the present study to explore physicochemical properties and structural alert concerning BCF. The structures were downloaded from Pubchem, ChemSpider database. Two splitting techniques (biological sorting and structure-based) were used to divide the whole dataset into training and test set compounds. The QSAR study was carried out with two-dimensional descriptors (2D) calculated from PaDEL by applying genetic algorithm (GA) as chemometric tools using QSARINS software. The models were statistically robust enough both internally as well as externally (Q: 0.709-0.722, Q : 0.717-0.903, CCC: 0.857-0.880). Overall molecular mass, presence of fused, and heterocyclic ring with electron-withdrawing groups affect the BCF value. The developed models reflected extended applicability domain (AD) and reliable predictions than the reported models for the studied chemical class. Finally, predictions of unknown organophosphate pesticides and the toxic nature of unknown organophosphate pesticides were commented on. These findings may be useful for the scientific community in prioritizing high potential pesticides of organophosphate class.

摘要

不加区分地使用农药所具有的持久性和累积性,已成为生态毒理学危害。生物富集因子(BCF)是对水生环境进行环境评估的关键要素之一。全球模型预测准确性的局限性促使在新兴化合物毒性建模中使用局部预测模型。从农药特性数据库收集了多种有机磷酸酯(n = 55)的BCF数据,并将其用作本研究中的模型数据集,以探索与BCF有关的物理化学性质和结构警示。这些结构从Pubchem、ChemSpider数据库下载。使用两种拆分技术(生物学分类和基于结构的拆分)将整个数据集划分为训练集和测试集化合物。通过应用遗传算法(GA)作为化学计量工具,使用QSARINS软件,利用从PaDEL计算得到的二维描述符(2D)进行了定量构效关系(QSAR)研究。这些模型在内部和外部都具有足够的统计学稳健性(Q:0.709 - 0.722,Q':0.717 - 0.903,CCC:0.857 - 0.880)。整体分子量、稠环以及带有吸电子基团的杂环的存在会影响BCF值。与报道的针对所研究化学类别的模型相比,所开发的模型体现出更广泛的适用域(AD)和可靠的预测能力。最后,对未知有机磷酸酯农药的预测以及未知有机磷酸酯农药的毒性性质进行了评论。这些发现可能对科学界在对高潜力有机磷酸酯类农药进行优先级排序方面有用。

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