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米曲霉中GATA转录因子家族的全基因组鉴定及其在温度和盐胁迫下的表达模式

Genome-wide identification of the GATA transcription factor family and their expression patterns under temperature and salt stress in Aspergillus oryzae.

作者信息

Jiang Chunmiao, Lv Gongbo, Ge Jinxin, He Bin, Zhang Zhe, Hu Zhihong, Zeng Bin

机构信息

Jiangxi Key Laboratory of Bioprocess Engineering and Co-Innovation Center for In-Vitro Diagnostic Reagents and Devices of Jiangxi Province, College of Life Sciences, Jiangxi Science and Technology Normal University, Nanchang, 330013, China.

出版信息

AMB Express. 2021 Apr 19;11(1):56. doi: 10.1186/s13568-021-01212-w.

Abstract

GATA transcription factors (TFs) are involved in the regulation of growth processes and various environmental stresses. Although GATA TFs involved in abiotic stress in plants and some fungi have been analyzed, information regarding GATA TFs in Aspergillus oryzae is extremely poor. In this study, we identified and functionally characterized seven GATA proteins from A. oryzae 3.042 genome, including a novel AoSnf5 GATA TF with 20-residue between the Cys-X-Cys motifs which was found in Aspergillus GATA TFs for the first time. Phylogenetic analysis indicated that these seven A. oryzae GATA TFs could be classified into six subgroups. Analysis of conserved motifs demonstrated that Aspergillus GATA TFs with similar motif compositions clustered in one subgroup, suggesting that they might possess similar genetic functions, further confirming the accuracy of the phylogenetic relationship. Furthermore, the expression patterns of seven A. oryzae GATA TFs under temperature and salt stresses indicated that A. oryzae GATA TFs were mainly responsive to high temperature and high salt stress. The protein-protein interaction network of A. oryzae GATA TFs revealed certain potentially interacting proteins. The comprehensive analysis of A. oryzae GATA TFs will be beneficial for understanding their biological function and evolutionary features and provide an important starting point to further understand the role of GATA TFs in the regulation of distinct environmental conditions in A. oryzae.

摘要

GATA转录因子(TFs)参与生长过程的调控以及各种环境胁迫反应。尽管已经对参与植物和一些真菌非生物胁迫的GATA TFs进行了分析,但关于米曲霉中GATA TFs的信息却极为匮乏。在本研究中,我们从米曲霉3.042基因组中鉴定并对7种GATA蛋白进行了功能表征,其中包括一种新型的AoSnf5 GATA TF,其在半胱氨酸- X -半胱氨酸基序之间有20个氨基酸残基,这是首次在曲霉属GATA TFs中发现。系统发育分析表明,这7种米曲霉GATA TFs可分为6个亚组。保守基序分析表明,具有相似基序组成的曲霉属GATA TFs聚集在一个亚组中,这表明它们可能具有相似的遗传功能,进一步证实了系统发育关系的准确性。此外,7种米曲霉GATA TFs在温度和盐胁迫下的表达模式表明,米曲霉GATA TFs主要对高温和高盐胁迫作出反应。米曲霉GATA TFs的蛋白质-蛋白质相互作用网络揭示了某些潜在的相互作用蛋白。对米曲霉GATA TFs的综合分析将有助于理解它们的生物学功能和进化特征,并为进一步了解GATA TFs在米曲霉不同环境条件调控中的作用提供重要的切入点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/543f/8055810/9edb17821f48/13568_2021_1212_Fig1_HTML.jpg

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