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凝聚素在有丝分裂酵母基因组组织及其他方面的潜在作用。

Potential roles of condensin in genome organization and beyond in fission yeast.

机构信息

Department of Systems Biotechnology, Chung-Ang University, Anseong, 17546, Republic of Korea.

出版信息

J Microbiol. 2021 May;59(5):449-459. doi: 10.1007/s12275-021-1039-2. Epub 2021 Apr 20.

DOI:10.1007/s12275-021-1039-2
PMID:33877578
Abstract

The genome is highly organized hierarchically by the function of structural maintenance of chromosomes (SMC) complex proteins such as condensin and cohesin from bacteria to humans. Although the roles of SMC complex proteins have been well characterized, their specialized roles in nuclear processes remain unclear. Condensin and cohesin have distinct binding sites and mediate long-range and short-range genomic associations, respectively, to form cell cycle-specific genome organization. Condensin can be recruited to highly expressed genes as well as dispersed repeat genetic elements, such as Pol III-transcribed genes, LTR retrotransposon, and rDNA repeat. In particular, mitotic transcription factors Ace2 and Ams2 recruit condensin to their target genes, forming centromeric clustering during mitosis. Condensin is potentially involved in various chromosomal processes such as the mobility of chromosomes, chromosome territories, DNA reannealing, and transcription factories. The current knowledge of condensin in fission yeast summarized in this review can help us understand how condensin mediates genome organization and participates in chromosomal processes in other organisms.

摘要

基因组通过结构维持染色体(SMC)复合物蛋白的功能在细菌到人类中高度组织层次化,例如凝聚素和黏合蛋白。尽管 SMC 复合物蛋白的作用已经得到很好的描述,但它们在核过程中的专门作用仍不清楚。凝聚素和黏合蛋白具有不同的结合位点,分别介导长程和短程基因组关联,以形成细胞周期特异性基因组组织。凝聚素可以被招募到高表达基因以及分散的重复遗传元件,如 III 型 Pol 转录基因、LTR 反转录转座子和 rDNA 重复。特别是,有丝分裂转录因子 Ace2 和 Ams2 将凝聚素招募到其靶基因上,在有丝分裂过程中形成着丝粒簇集。凝聚素可能参与各种染色体过程,如染色体的移动、染色体区域、DNA 再退火和转录工厂。本综述总结了裂殖酵母中凝聚素的现有知识,可以帮助我们理解凝聚素如何介导基因组组织并参与其他生物体中的染色体过程。

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Potential roles of condensin in genome organization and beyond in fission yeast.凝聚素在有丝分裂酵母基因组组织及其他方面的潜在作用。
J Microbiol. 2021 May;59(5):449-459. doi: 10.1007/s12275-021-1039-2. Epub 2021 Apr 20.
2
Transcription factors mediate condensin recruitment and global chromosomal organization in fission yeast.转录因子介导裂殖酵母中的凝聚素募集和全局染色体组织。
Nat Genet. 2016 Oct;48(10):1242-52. doi: 10.1038/ng.3647. Epub 2016 Aug 22.
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Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.裂殖酵母的 condensin 有助于间期染色质组织,并防止转录偶联的 DNA 损伤。
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Nucleosome eviction in mitosis assists condensin loading and chromosome condensation.有丝分裂中的核小体移除有助于凝聚素加载和染色体凝聚。
EMBO J. 2016 Jul 15;35(14):1565-81. doi: 10.15252/embj.201592849. Epub 2016 Jun 6.
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Condensin but not cohesin SMC heterodimer induces DNA reannealing through protein-protein assembly.凝缩蛋白而非黏连蛋白SMC异源二聚体通过蛋白质-蛋白质组装诱导DNA复性。
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Proc Natl Acad Sci U S A. 2019 May 28;116(22):10889-10898. doi: 10.1073/pnas.1902699116. Epub 2019 May 9.

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本文引用的文献

1
Comparison of loop extrusion and diffusion capture as mitotic chromosome formation pathways in fission yeast.有丝分裂染色体形成途径中环挤出和扩散捕获的比较。
Nucleic Acids Res. 2021 Feb 22;49(3):1294-1312. doi: 10.1093/nar/gkaa1270.
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Fission yeast condensin contributes to interphase chromatin organization and prevents transcription-coupled DNA damage.裂殖酵母的 condensin 有助于间期染色质组织,并防止转录偶联的 DNA 损伤。
Genome Biol. 2020 Nov 5;21(1):272. doi: 10.1186/s13059-020-02183-0.
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Condensin I subunit Cap-G is essential for proper gene expression during the maturation of post-mitotic neurons.
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BiFCo: visualizing cohesin assembly/disassembly cycle in living cells.BiFCo:可视化活细胞中黏连蛋白的组装/拆卸循环。
Life Sci Alliance. 2023 May 9;6(7). doi: 10.26508/lsa.202301945. Print 2023 Jul.
凝缩蛋白 I 亚基 Cap-G 对于有丝分裂后神经元成熟过程中的正确基因表达是必需的。
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Aurora B and condensin are dispensable for chromosome arm and telomere separation during meiosis II.在减数分裂 II 过程中,极光 B 和凝聚素对于染色体臂和端粒的分离并非必需。
Mol Biol Cell. 2020 Apr 15;31(9):889-905. doi: 10.1091/mbc.E20-01-0021. Epub 2020 Feb 26.
5
Chromosome territories and the global regulation of the genome.染色体区域与基因组的全局调控。
Genes Chromosomes Cancer. 2019 Jul;58(7):407-426. doi: 10.1002/gcc.22732. Epub 2019 Mar 18.
6
The Smc5/6 Complex: New and Old Functions of the Enigmatic Long-Distance Relative.SMC5/6 复合物:神秘长距离相对物的新老功能。
Annu Rev Genet. 2018 Nov 23;52:89-107. doi: 10.1146/annurev-genet-120417-031353.
7
Condensin controls cellular RNA levels through the accurate segregation of chromosomes instead of directly regulating transcription.凝聚素通过准确分离染色体而不是直接调节转录来控制细胞 RNA 水平。
Elife. 2018 Sep 19;7:e38517. doi: 10.7554/eLife.38517.
8
In Vivo Evidence for ATPase-Dependent DNA Translocation by the Bacillus subtilis SMC Condensin Complex.活体内证据表明枯草芽孢杆菌 SMC 凝聚素复合物通过 ATP 酶依赖性 DNA 易位。
Mol Cell. 2018 Sep 6;71(5):841-847.e5. doi: 10.1016/j.molcel.2018.07.006. Epub 2018 Aug 9.
9
Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.大肠杆菌染色体的核基质相关和凝聚蛋白的多尺度结构。
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