Suppr超能文献

从具有不同温度模式的苏打湖分离出的菌株对低温的分子和生理适应性

Molecular and Physiological Adaptations to Low Temperature in Strains Isolated from Soda Lakes with Different Temperature Regimes.

作者信息

Ahn Anne-Catherine, Jongepier Evelien, Schuurmans J Merijn, Rijpstra W Irene C, Sinninghe Damsté Jaap S, Galinski Erwin A, Roman Pawel, Sorokin Dimitry, Muyzer Gerard

机构信息

Microbial Systems Ecology, Department of Freshwater and Marine Ecology, Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Amsterdam, The Netherlands.

Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research and Utrecht University, Den Burg, The Netherlands.

出版信息

mSystems. 2021 Apr 27;6(2):e01202-20. doi: 10.1128/mSystems.01202-20.

Abstract

The genus comprises sulfur-oxidizing bacteria thriving in soda lakes at high pH and salinity. Depending on the geographical location and the season, these lakes can strongly vary in temperature. To obtain a comprehensive understanding of the molecular and physiological adaptations to low temperature, we compared the responses of two strains to low (10°C) and high (30°C) temperatures. For this, the strains were grown under controlled conditions in chemostats and analyzed for their gene expression (RNA sequencing [RNA-Seq]), membrane lipid composition, and glycine betaine content. The strain AL2 originated from a soda lake in southeast Siberia that is exposed to strong seasonal temperature differences, including freezing winters, whereas ALJ2 was isolated from an East African Rift Valley soda lake with a constant warm temperature the year round. The strain AL2 grew faster than ALJ2 at 10°C, likely due to its 3-fold-higher concentration of the osmolyte glycine betaine. Moreover, significant changes in the membrane lipid composition were observed for both strains, leading to an increase in their unsaturated fatty acid content via the Fab pathway to avoid membrane stiffness. Genes for the transcriptional and translational machinery, as well as for counteracting cold-induced hampering of nucleotides and proteins, were upregulated. Oxidative stress was reduced by induction of vitamin B biosynthesis genes, and growth at 10°C provoked downregulation of genes involved in the second half of the sulfur oxidation pathway. Genes for intracellular signal transduction were differentially expressed, and interestingly, AL2 upregulated flagellin expression, whereas ALJ2 downregulated it. In addition to their haloalkaline conditions, soda lakes can also harbor a variety of other extreme parameters, to which their microbial communities need to adapt. However, for most of these supplementary stressors, it is not well known yet how haloalkaliphiles adapt and resist. Here, we studied the strategy for adaptation to low temperature in the haloalkaliphilic genus by using two strains isolated from soda lakes with different temperature regimes. Even though the strains showed a strong difference in growth rate at 10°C, they exhibited similar molecular and physiological adaptation responses. We hypothesize that they take advantage of resistance mechanisms against other stressors commonly found in soda lakes, which are therefore maintained in the bacteria living in the absence of low-temperature pressure. A major difference, however, was detected for their glycine betaine content at 10°C, highlighting the power of this osmolyte to also act as a key compound in cryoprotection.

摘要

该属包括在高pH值和高盐度的苏打湖中繁衍生息的硫氧化细菌。根据地理位置和季节的不同,这些湖泊的温度变化很大。为了全面了解对低温的分子和生理适应性,我们比较了两株菌株在低温(10°C)和高温(30°C)下的反应。为此,将菌株在恒化器的受控条件下培养,并分析其基因表达(RNA测序[RNA-Seq])、膜脂组成和甘氨酸甜菜碱含量。菌株AL2源自西伯利亚东南部的一个苏打湖,该湖经历强烈的季节性温度差异,包括寒冷的冬季,而ALJ2则从东非大裂谷的一个苏打湖中分离出来,该湖全年温度恒定温暖。在10°C时,菌株AL2的生长速度比ALJ2快,这可能是由于其渗透溶质甘氨酸甜菜碱的浓度高出3倍。此外,两株菌株的膜脂组成均发生了显著变化,通过Fab途径增加了不饱和脂肪酸含量,以避免膜变硬。转录和翻译机制以及对抗低温诱导的核苷酸和蛋白质阻碍的基因均上调。通过诱导维生素B生物合成基因降低了氧化应激,在10°C下生长导致硫氧化途径后半段相关基因的下调。细胞内信号转导基因差异表达,有趣的是,AL2上调了鞭毛蛋白表达,而ALJ2下调了鞭毛蛋白表达。除了其盐碱条件外,苏打湖还可能存在各种其他极端参数,其微生物群落需要适应这些参数。然而,对于大多数这些附加应激源,目前尚不清楚嗜盐碱菌是如何适应和抵抗的。在这里,我们通过使用从具有不同温度模式的苏打湖中分离的两株菌株,研究了嗜盐碱菌属适应低温的策略。尽管这两株菌株在10°C时的生长速度存在很大差异,但它们表现出相似的分子和生理适应反应。我们假设它们利用了对苏打湖中常见的其他应激源的抗性机制,因此这些机制在没有低温压力的情况下生活的细菌中得以维持。然而,在10°C时检测到它们的甘氨酸甜菜碱含量存在一个主要差异,突出了这种渗透溶质在冷冻保护中也作为关键化合物的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d429/8092127/5eb749c114e0/msystems.01202-20-f001.jpg

相似文献

5
Dynamics of species in a co-culture under selective pressure of ampicillin.
FEMS Microbes. 2023 Nov 8;4:xtad020. doi: 10.1093/femsmc/xtad020. eCollection 2023.
7
The microbial sulfur cycle at extremely haloalkaline conditions of soda lakes.
Front Microbiol. 2011 Mar 21;2:44. doi: 10.3389/fmicb.2011.00044. eCollection 2011.
8
Identification of the Biosynthetic Pathway of Glycine Betaine That Is Responsible for Salinity Tolerance in Halophilic D301.
Front Microbiol. 2022 Apr 18;13:875843. doi: 10.3389/fmicb.2022.875843. eCollection 2022.

本文引用的文献

2
OrthoFinder: phylogenetic orthology inference for comparative genomics.
Genome Biol. 2019 Nov 14;20(1):238. doi: 10.1186/s13059-019-1832-y.
3
A shared core microbiome in soda lakes separated by large distances.
Nat Commun. 2019 Sep 17;10(1):4230. doi: 10.1038/s41467-019-12195-5.
5
Thermodynamic properties of aqueous osmolyte solutions at high-pressure conditions.
Biophys Chem. 2019 Oct;253:106211. doi: 10.1016/j.bpc.2019.106211. Epub 2019 Jun 27.
6
Type IV pili: dynamics, biophysics and functional consequences.
Nat Rev Microbiol. 2019 Jul;17(7):429-440. doi: 10.1038/s41579-019-0195-4.
7
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sediments.
Microbiome. 2018 Sep 19;6(1):168. doi: 10.1186/s40168-018-0548-7.
8
A novel bacterial sulfur oxidation pathway provides a new link between the cycles of organic and inorganic sulfur compounds.
ISME J. 2018 Oct;12(10):2479-2491. doi: 10.1038/s41396-018-0209-7. Epub 2018 Jun 21.
9
Differential analysis of RNA-seq incorporating quantification uncertainty.
Nat Methods. 2017 Jul;14(7):687-690. doi: 10.1038/nmeth.4324. Epub 2017 Jun 5.
10
Adaptations of archaeal and bacterial membranes to variations in temperature, pH and pressure.
Extremophiles. 2017 Jul;21(4):651-670. doi: 10.1007/s00792-017-0939-x. Epub 2017 May 15.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验