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Nationwide outbreak of invasive listeriosis associated with consumption of meat products in health care facilities, Germany, 2014-2019.
Clin Microbiol Infect. 2021 Jul;27(7):1035.e1-1035.e5. doi: 10.1016/j.cmi.2020.09.020. Epub 2020 Sep 23.
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Whole-Genome Sequencing of Recent Listeria monocytogenes Isolates from Germany Reveals Population Structure and Disease Clusters.
J Clin Microbiol. 2018 May 25;56(6). doi: 10.1128/JCM.00119-18. Print 2018 Jun.
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NanoPack: visualizing and processing long-read sequencing data.
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
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Molecular Tracing to Find Source of Protracted Invasive Listeriosis Outbreak, Southern Germany, 2012-2016.
Emerg Infect Dis. 2017 Oct;23(10):1680-1683. doi: 10.3201/eid2310.161623.
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
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NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
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Genome Sequences of Listeria monocytogenes Strains Responsible for Cheese- and Cooked Ham Product-Associated Swiss Listeriosis Outbreaks in 2005 and 2011.
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Ongoing outbreak of invasive listeriosis, Germany, 2012 to 2015.
Euro Surveill. 2015;20(50). doi: 10.2807/1560-7917.ES.2015.20.50.30094.
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Defining and Evaluating a Core Genome Multilocus Sequence Typing Scheme for Whole-Genome Sequence-Based Typing of Listeria monocytogenes.
J Clin Microbiol. 2015 Sep;53(9):2869-76. doi: 10.1128/JCM.01193-15. Epub 2015 Jul 1.
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Trimmomatic: a flexible trimmer for Illumina sequence data.
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