The First Clinical Medical College, Guangzhou University of Traditional Chinese Medicine, Guangzhou, China.
Clinical laboratory, The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, China.
Bioengineered. 2021 Dec;12(1):1689-1697. doi: 10.1080/21655979.2021.1921552.
There may be a mutually reinforcing relationship between hepatocellular carcinoma (HCC) and depression, but the mechanism is unknown. This study used bioinformatics to evaluate the relationship between HCC and depression at the genetic level. Genes associated with HCC and depression were obtained from pubmed2ensemble. Overlapping genes were annotated by gene ontology (GO) function and enriched by Kyoto Encyclopedia of Genes and Genomes (KEGG) signal pathway. The cluster-1 genes obtained by Cytoscape were analyzed by GEPIA for expression and overall survival in HCC and, finally, introduced target genes to DGIdb to get associated drugs. A total of 199 genes were found to be in common between HCC and depression. GO term enrichment analysis on DAVID found the top-6 biological processes to be mainly associated with cell death and apoptosis. The top-6 cellular component terms are extracellular. The top-6 of molecular function terms are mainly associated with receptor binding. The top-6 pathways enriched by KEGG are mainly related to inflammatory response. IGF1, VEGFA, and SERPINE1 had statistical differences in expression and 10-year survival rate. There are total 45 drugs that act on VEGFA and SERPINE1. Based on our findings, we hypothesize that the mechanism of the interaction between HCC and depression may be related to cell death or apoptosis. Further studies are needed to verify this hypothesis.
肝细胞癌 (HCC) 和抑郁症之间可能存在相互促进的关系,但机制尚不清楚。本研究使用生物信息学方法从 pubmed2ensemble 中评估 HCC 和抑郁症在遗传水平上的关系。从 pubmed2ensemble 中获取与 HCC 和抑郁症相关的基因。通过基因本体论 (GO) 功能注释重叠基因,并通过京都基因与基因组百科全书 (KEGG) 信号通路进行富集。通过 Cytoscape 获得的 Cluster-1 基因通过 GEPIA 分析 HCC 中的表达和总生存率,最后将靶基因引入 DGIdb 以获得相关药物。共发现 199 个 HCC 和抑郁症之间共有的基因。DAVID 的 DAVID 进行的 GO 术语富集分析发现,前 6 个生物学过程主要与细胞死亡和凋亡有关。前 6 个细胞成分术语主要与细胞外有关。前 6 个分子功能术语主要与受体结合有关。KEGG 中富集的前 6 个途径主要与炎症反应有关。IGF1、VEGFA 和 SERPINE1 的表达和 10 年生存率有统计学差异。有 45 种药物作用于 VEGFA 和 SERPINE1。基于我们的发现,我们假设 HCC 和抑郁症之间相互作用的机制可能与细胞死亡或凋亡有关。需要进一步的研究来验证这一假设。