Department of Cellular and Molecular Biology and Microbiology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran.
Department of Biochemistry, MALDI Mass Spectrometry Facility, The University of Western Ontario, London, ON, Canada.
World J Microbiol Biotechnol. 2021 May 10;37(6):97. doi: 10.1007/s11274-021-03064-9.
Bacterial lipopeptides have become a research focus of many studies owing to their industrial and pharmaceutical importance. Although such studies focused on researching purification procedures and qualitative analysis, much remains to be explored and developed to improve the current methods. To enable thorough studies of lipopeptides, this paper describes a new method for purification and characterization of in-gel anionic lipopeptides. Specifically, lipopeptides attributed to the anti-staphylococcal activity of Bacillus mojavensis HF were separated using SDS-PAGE (sodium dodecyl sulphate-polyacrylamide gel electrophoresis) and subsequently characterized using mass spectrometry. Lipopeptide band obtained by gel electrophoresis was first visualized using three different staining methods. Next, the lipopeptide isomers were efficiently recovered from the gel band and structural characterization of the extracted lipopeptides was carried out by matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF MS). MS analysis revealed that Bacillus mojavensis HF produced three types of lipopeptides including surfactin, fengycin, and kurstakin. 14 clusters of ion peaks were identified as fengycin A with fatty acid of C15-C17, fengycin B (C16, C17), surfactin (C13-C16), and kurstakin (C9-C12). Moreover, tandem mass spectrometric analysis (MS/MS) revealed the sequences of fengycin A and surfactin. In this study, we identified a high variety and number of surfactin and fengycin isomers, which previous reports lacked. To the best of our knowledge, we are the first to report the presence of kurstakin in Bacillus mojavensis species. Finally, we demonstrated that our gel-based study of lipopeptides allowed for a precise and reproducible investigation of these molecules.
由于其工业和药用重要性,细菌脂肽已成为许多研究的焦点。尽管这些研究侧重于研究纯化程序和定性分析,但仍有许多需要探索和开发的地方,以改进当前的方法。为了能够对脂肽进行彻底研究,本文描述了一种新的用于凝胶中阴离子脂肽的纯化和表征的方法。具体来说,使用 SDS-PAGE(十二烷基硫酸钠-聚丙烯酰胺凝胶电泳)分离归因于地衣芽孢杆菌 HF 的抗葡萄球菌活性的脂肽,然后使用质谱进行表征。首先使用三种不同的染色方法可视化凝胶电泳获得的脂肽带。然后,从凝胶带中有效回收脂肽异构体,并通过基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)对提取的脂肽进行结构表征。MS 分析表明,地衣芽孢杆菌 HF 产生了三种脂肽,包括表面活性剂、丰原素和 kurstakin。鉴定出 14 个峰簇为丰原素 A(C15-C17)、丰原素 B(C16、C17)、表面活性剂(C13-C16)和 kurstakin(C9-C12)。此外,串联质谱分析(MS/MS)揭示了丰原素 A 和表面活性剂的序列。在本研究中,我们鉴定了高多样性和数量的表面活性剂和丰原素异构体,而以前的报告中缺乏这些异构体。据我们所知,我们是第一个报道在地衣芽孢杆菌属中存在 kurstakin 的。最后,我们证明了我们基于凝胶的脂肽研究能够对这些分子进行精确和可重复的研究。