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本文引用的文献

1
Validation of clinical prediction models: what does the "calibration slope" really measure?临床预测模型的验证:“校准斜率”到底在衡量什么?
J Clin Epidemiol. 2020 Feb;118:93-99. doi: 10.1016/j.jclinepi.2019.09.016. Epub 2019 Oct 9.
2
Multitask learning and benchmarking with clinical time series data.多任务学习与临床时间序列数据的基准测试。
Sci Data. 2019 Jun 17;6(1):96. doi: 10.1038/s41597-019-0103-9.
3
DeepSurv: personalized treatment recommender system using a Cox proportional hazards deep neural network.DeepSurv:使用 Cox 比例风险深度神经网络的个性化治疗推荐系统。
BMC Med Res Methodol. 2018 Feb 26;18(1):24. doi: 10.1186/s12874-018-0482-1.
4
MIMIC-III, a freely accessible critical care database.MIMIC-III,一个免费获取的重症监护数据库。
Sci Data. 2016 May 24;3:160035. doi: 10.1038/sdata.2016.35.
5
Selection of individuals for genetic testing for familial hypercholesterolaemia: development and external validation of a prediction model for the presence of a mutation causing familial hypercholesterolaemia.家族性高胆固醇血症患者遗传检测的选择:导致家族性高胆固醇血症突变的存在预测模型的建立和外部验证。
Eur Heart J. 2017 Feb 21;38(8):565-573. doi: 10.1093/eurheartj/ehw135.
6
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.弥漫性低级别胶质瘤的综合、整合基因组分析
N Engl J Med. 2015 Jun 25;372(26):2481-98. doi: 10.1056/NEJMoa1402121. Epub 2015 Jun 10.
7
Tests of calibration and goodness-of-fit in the survival setting.生存环境下的校准和拟合优度检验。
Stat Med. 2015 May 10;34(10):1659-80. doi: 10.1002/sim.6428. Epub 2015 Feb 11.
8
Survival analysis and regression models.生存分析与回归模型。
J Nucl Cardiol. 2014 Aug;21(4):686-94. doi: 10.1007/s12350-014-9908-2. Epub 2014 May 9.
9
External validation of a Cox prognostic model: principles and methods.Cox 预后模型的外部验证:原则与方法。
BMC Med Res Methodol. 2013 Mar 6;13:33. doi: 10.1186/1471-2288-13-33.
10
General cardiovascular risk profile for use in primary care: the Framingham Heart Study.用于初级保健的一般心血管风险概况:弗雷明汉心脏研究
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X-CAL:生存分析的显式校准

X-CAL: Explicit Calibration for Survival Analysis.

作者信息

Goldstein Mark, Han Xintian, Puli Aahlad, Perotte Adler J, Ranganath Rajesh

机构信息

New York University.

Columbia University.

出版信息

Adv Neural Inf Process Syst. 2020 Dec;33:18296-18307.

PMID:34017160
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8132615/
Abstract

Survival analysis models the distribution of time until an event of interest, such as discharge from the hospital or admission to the ICU. When a model's predicted number of events within any time interval is similar to the observed number, it is called . A survival model's calibration can be measured using, for instance, distributional calibration (D-CALIBRATION) [Haider et al., 2020] which computes the squared difference between the observed and predicted number of events within different time intervals. Classically, calibration is addressed in post-training analysis. We develop explicit calibration (X-CAL), which turns D-CALIBRATION into a differentiable objective that can be used in survival modeling alongside maximum likelihood estimation and other objectives. X-CAL allows practitioners to directly optimize calibration and strike a desired balance between predictive power and calibration. In our experiments, we fit a variety of shallow and deep models on simulated data, a survival dataset based on MNIST, on length-of-stay prediction using MIMIC-III data, and on brain cancer data from The Cancer Genome Atlas. We show that the models we study can be miscalibrated. We give experimental evidence on these datasets that X-CAL improves D-CALIBRATION without a large decrease in concordance or likelihood.

摘要

生存分析对直至感兴趣事件(如出院或入住重症监护病房)发生的时间分布进行建模。当模型在任何时间间隔内预测的事件数量与观察到的数量相似时,它被称为 。生存模型的校准可以例如使用分布校准(D-CALIBRATION)[海德尔等人,2020年]来衡量,该方法计算不同时间间隔内观察到的和预测的事件数量之间的平方差。传统上,校准是在训练后分析中解决的。我们开发了显式校准(X-CAL),它将D-CALIBRATION转化为一个可微目标,可与最大似然估计和其他目标一起用于生存建模。X-CAL允许从业者直接优化校准,并在预测能力和校准之间达成理想的平衡。在我们的实验中,我们在模拟数据、基于MNIST的生存数据集、使用MIMIC-III数据进行的住院时间预测以及来自癌症基因组图谱的脑癌数据上拟合了各种浅层和深层模型。我们表明我们研究的模型可能存在校准错误。我们在这些数据集上给出实验证据,表明X-CAL在不大幅降低一致性或似然性的情况下改进了D-CALIBRATION。