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少数精选种——生物群系中常见和稀有土壤细菌的多样性变化。

The chosen few-variations in common and rare soil bacteria across biomes.

机构信息

Institute of Biogeochemistry and Pollutant Dynamics, ETH Zurich, Zurich, 8092, Switzerland.

Institute of Terrestrial Ecosystems, ETH Zurich, Zurich, 8092, Switzerland.

出版信息

ISME J. 2021 Nov;15(11):3315-3325. doi: 10.1038/s41396-021-00981-3. Epub 2021 May 25.

Abstract

Soil bacterial communities are dominated by a few abundant species, while their richness is associated with rare species with largely unknown ecological roles and biogeography. Analyses of previously published soil bacterial community data using a novel classification of common and rare bacteria indicate that only 0.4% of bacterial species can be considered common and are prevalent across biomes. The remaining bacterial species designated as rare are endemic with low relative abundances. Observations coupled with mechanistic models highlight the central role of soil wetness in shaping bacterial rarity. An individual-based model reveals systematic shifts in community composition induced by low carbon inputs in drier soils that deprive common species of exhibiting physiological advantages relative to other species. We find that only a "chosen few" common species shape bacterial communities across biomes; however, their contributions are curtailed in resource-limited environments where a larger number of rare species constitutes the soil microbiome.

摘要

土壤细菌群落主要由少数丰富的物种组成,而其丰富度与生态作用和生物地理学知之甚少的稀有物种有关。使用一种新的常见和稀有细菌分类方法对先前发表的土壤细菌群落数据进行分析表明,只有 0.4%的细菌物种可以被认为是常见的,并且在生物群落中普遍存在。其余被指定为稀有的细菌物种是地方性的,相对丰度较低。观察结果和机制模型都强调了土壤湿度在塑造细菌稀有性方面的核心作用。基于个体的模型揭示了在较干燥的土壤中,由于低碳输入导致的群落组成的系统变化,这使得常见物种相对于其他物种失去了生理优势。我们发现,只有少数“精选”的常见物种塑造了跨生物群落的细菌群落;然而,在资源有限的环境中,由于稀有物种的数量较多,它们的贡献受到限制,这些稀有物种构成了土壤微生物组。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc2d/8528968/5ab5e46041e6/41396_2021_981_Fig1_HTML.jpg

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