University of Belgrade, Studentski trg 1, RS-11000, Belgrade, Serbia.
University of Belgrade, Faculty of Medicine, Institute of Anatomy "Niko Miljanić", Dr. Subotica 4/2, RS-11129, Belgrade, Serbia.
Chem Biol Interact. 2021 Aug 25;345:109533. doi: 10.1016/j.cbi.2021.109533. Epub 2021 May 27.
In recent years, various AI-based methods have been developed in order to uncover chemico-biological interactions associated with DNA damage and oxidative stress. Various decision trees, bayesian networks, random forests, logistic regression models, support vector machines as well as deep learning tools, have great potential in the area of molecular biology and toxicology, and it is estimated that in the future, they will greatly contribute to our understanding of molecular and cellular mechanisms associated with DNA damage and repair. In this concise review, we discuss recent attempts to build machine learning tools for assessment of radiation - induced DNA damage as well as algorithms that can analyze the data from the most frequently used DNA damage assays in molecular biology. We also review recent works on the detection of antioxidant proteins with machine learning, and the use of AI-related methods for prediction and evaluation of noncoding DNA sequences. Finally, we discuss previously published research on the potential application of machine learning tools in aging research.
近年来,已经开发出了各种基于人工智能的方法,以揭示与 DNA 损伤和氧化应激相关的化学生物相互作用。各种决策树、贝叶斯网络、随机森林、逻辑回归模型、支持向量机以及深度学习工具在分子生物学和毒理学领域具有巨大的潜力,据估计,未来它们将极大地帮助我们理解与 DNA 损伤和修复相关的分子和细胞机制。在这篇简明的综述中,我们讨论了最近尝试构建用于评估辐射诱导的 DNA 损伤的机器学习工具的方法,以及可分析分子生物学中最常用的 DNA 损伤检测方法所产生的数据的算法。我们还回顾了最近关于使用机器学习检测抗氧化蛋白的研究,以及使用与人工智能相关的方法对非编码 DNA 序列进行预测和评估的研究。最后,我们讨论了之前关于机器学习工具在衰老研究中的潜在应用的研究。