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盘基网柄菌中染色体外复制及内源性质粒维持所必需区域的鉴定

Identification of regions essential for extrachromosomal replication and maintenance of an endogenous plasmid in Dictyostelium.

作者信息

Ahern K G, Howard P K, Firtel R A

机构信息

Department of Biology, University of California, San Diego, La Jolla 92093.

出版信息

Nucleic Acids Res. 1988 Jul 25;16(14B):6825-37. doi: 10.1093/nar/16.14.6825.

DOI:10.1093/nar/16.14.6825
PMID:3405751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC338336/
Abstract

Initial experiments with the endogenous 12.3 kb Dictyostelium discoideum plasmid Ddp1 led to the generation of a large shuttle vector, Ddp1-20. In addition to Ddp1, this vector contains pBR322 and a gene fusion that confers G418 resistance in Dictyostelium cells. We have shown that Ddp1-20 replicates extrachromosomally in Dictyostelium cells and can be grown in Escherichia coli cells (1). We have now examined deletions within this vector to identify the elements essential for extrachromosomal replication and stable maintenance of the plasmid. We find that a 2.2 kb fragment is sufficient to confer stable, extrachromosomal replication with a reduction in copy number from about 40 to approximately 10-15 copies per cell. Vectors containing additional Ddp1 sequences have a higher copy number. The 2.2 kb region contains none of the complete, previously identified transcription units on Ddp1 expressed during vegetative growth or development. These results suggest that gene products expressed by Ddp1 are not essential for replication, stability, or partitioning of the plasmid between daughter cells. Vectors carrying only the 2.2 kb fragment plus the gene fusion conferring G418 resistance transform Dictyostelium cells with high efficiency using either calcium phosphate mediated transformation or electroporation. Finally, we have examined the relative levels of expression of actin promoters driving neoR genes when in extrachromosomal or integrating vectors.

摘要

对内生的12.3 kb盘基网柄菌质粒Ddp1进行的初步实验产生了一个大型穿梭载体Ddp1 - 20。除了Ddp1,该载体还包含pBR322和一个在盘基网柄菌细胞中赋予G418抗性的基因融合体。我们已经表明,Ddp1 - 20在盘基网柄菌细胞中进行染色体外复制,并且可以在大肠杆菌细胞中生长(1)。我们现在研究了该载体内的缺失情况,以确定染色体外复制和质粒稳定维持所必需的元件。我们发现一个2.2 kb的片段足以赋予稳定的染色体外复制能力,每个细胞的拷贝数从约40个减少到大约10 - 15个。含有额外Ddp1序列的载体具有更高的拷贝数。2.2 kb区域不包含在营养生长或发育过程中表达的Ddp1上任何完整的、先前已鉴定的转录单元。这些结果表明,Ddp1表达的基因产物对于质粒在子细胞之间的复制、稳定性或分配并非必需。仅携带2.2 kb片段加上赋予G418抗性的基因融合体的载体,使用磷酸钙介导的转化或电穿孔法都能高效转化盘基网柄菌细胞。最后,我们研究了在染色体外或整合载体中驱动neoR基因的肌动蛋白启动子的相对表达水平。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e173/338336/86e19fee8e55/nar00168-0150-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e173/338336/66abb1aa3481/nar00168-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e173/338336/86e19fee8e55/nar00168-0150-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e173/338336/66abb1aa3481/nar00168-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e173/338336/86e19fee8e55/nar00168-0150-a.jpg

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本文引用的文献

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Identification of a DNA sequence element required for efficient expression of a developmentally regulated and cAMP-inducible gene of Dictyostelium discoideum.鉴定一个 DNA 序列元件,该元件是秀丽隐杆线虫中发育调控和 cAMP 诱导基因高效表达所必需的。
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Identification of an endogenous plasmid in Dictyostelium discoideum.
复制起始于原生动物寄生虫溶组织内阿米巴核糖体DNA质粒的多个分散位点。
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Spatial and temporal expression of the Dictyostelium discoideum G alpha protein subunit G alpha 2: expression of a dominant negative protein inhibits proper prestalk to stalk differentiation.盘基网柄菌Gα蛋白亚基Gα2的时空表达:显性负性蛋白的表达抑制了前柄细胞向柄细胞的正常分化。
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Plasmid maintenance functions encoded on Dictyostelium discoideum nuclear plasmid Ddp1.编码在盘基网柄菌核质粒Ddp1上的质粒维持功能。
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The replication origin position and its relationship to a negative trans-acting transcription regulator encoded by Dictyostelium discoideum nuclear plasmid Ddp1.盘基网柄菌核质粒Ddp1编码的复制起始位点及其与负向反式作用转录调节因子的关系。
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Hygromycin resistance as a selectable marker in Dictyostelium discoideum.潮霉素抗性作为盘基网柄菌中的一种选择标记
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Sequence organization and gene expression of pGD1, a plasmid found in a wild isolate of Dictyostelium.在盘基网柄菌野生分离株中发现的质粒pGD1的序列组织与基因表达
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Curr Genet. 1990 Apr;17(4):321-5. doi: 10.1007/BF00314879.
鉴定出盘基网柄菌中的一个内源性质体。
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Nature. 1980 Aug 28;286(5776):860-5. doi: 10.1038/286860a0.