• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

吡咯烷-2,3-二酮作为青霉素结合蛋白3新型抑制剂的发现。

Discovery of Pyrrolidine-2,3-diones as Novel Inhibitors of PBP3.

作者信息

López-Pérez Arancha, Freischem Stefan, Grimm Immanuel, Weiergräber Oliver, Dingley Andrew J, López-Alberca María Pascual, Waldmann Herbert, Vollmer Waldemar, Kumar Kamal, Vuong Cuong

机构信息

AiCuris Anti-Infectives Cures GmbH, 42117 Wuppertal, Germany.

Centre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Type NE2 4AX, UK.

出版信息

Antibiotics (Basel). 2021 May 4;10(5):529. doi: 10.3390/antibiotics10050529.

DOI:10.3390/antibiotics10050529
PMID:34064358
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8147781/
Abstract

The alarming threat of the spread of multidrug resistant bacteria currently leaves clinicians with very limited options to combat infections, especially those from Gram-negative bacteria. Hence, innovative strategies to deliver the next generation of antibacterials are urgently needed. Penicillin binding proteins (PBPs) are proven targets inhibited by β-lactam antibiotics. To discover novel, non-β-lactam inhibitors against PBP3 of , we optimised a fluorescence assay based on a well-known thioester artificial substrate and performed a target screening using a focused protease-targeted library of 2455 compounds, which led to the identification of pyrrolidine-2,3-dione as a potential scaffold to inhibit the PBP3 target. Further chemical optimisation using a one-pot three-component reaction protocol delivered compounds with excellent target inhibition, initial antibacterial activities against and no apparent cytotoxicity. Our investigation revealed the key structural features; for instance, 3-hydroxyl group (R) and a heteroaryl group (R) appended to the -pyrroldine-2,3-dione via methylene linker required for target inhibition. Overall, the discovery of the pyrrolidine-2,3-dione class of inhibitors of PBP3 brings opportunities to target multidrug-resistant bacterial strains and calls for further optimisation to improve antibacterial activity against .

摘要

多重耐药细菌传播带来的惊人威胁,使得临床医生对抗感染的选择非常有限,尤其是针对革兰氏阴性菌引起的感染。因此,迫切需要创新策略来递送新一代抗菌药物。青霉素结合蛋白(PBPs)是已被证实的受β-内酰胺抗生素抑制的靶点。为了发现针对[具体细菌名称未给出]的PBP3的新型非β-内酰胺抑制剂,我们基于一种著名的硫酯人工底物优化了一种荧光测定法,并使用一个包含2455种化合物的聚焦蛋白酶靶向文库进行了靶点筛选,这导致鉴定出吡咯烷-2,3-二酮作为抑制PBP3靶点的潜在骨架。使用一锅三组分反应方案进行进一步的化学优化,得到了具有优异靶点抑制作用、对[具体细菌名称未给出]的初步抗菌活性且无明显细胞毒性的化合物。我们的研究揭示了关键结构特征;例如,通过亚甲基连接基连接到吡咯烷-2,3-二酮上的3-羟基基团(R)和杂芳基基团(R)是靶点抑制所必需的。总体而言,PBP3的吡咯烷-2,3-二酮类抑制剂的发现为靶向多重耐药细菌菌株带来了机会,并需要进一步优化以提高对[具体细菌名称未给出]的抗菌活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/e0efb7bea28e/antibiotics-10-00529-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/9059f241e270/antibiotics-10-00529-g0A1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/3a30d1e3d59b/antibiotics-10-00529-g0A2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/97b23a8671ed/antibiotics-10-00529-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/282bd259a5cb/antibiotics-10-00529-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/1aa38c9cf700/antibiotics-10-00529-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/020c34d4b83a/antibiotics-10-00529-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/e0efb7bea28e/antibiotics-10-00529-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/9059f241e270/antibiotics-10-00529-g0A1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/3a30d1e3d59b/antibiotics-10-00529-g0A2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/97b23a8671ed/antibiotics-10-00529-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/282bd259a5cb/antibiotics-10-00529-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/1aa38c9cf700/antibiotics-10-00529-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/020c34d4b83a/antibiotics-10-00529-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/e0efb7bea28e/antibiotics-10-00529-g004.jpg

相似文献

1
Discovery of Pyrrolidine-2,3-diones as Novel Inhibitors of PBP3.吡咯烷-2,3-二酮作为青霉素结合蛋白3新型抑制剂的发现。
Antibiotics (Basel). 2021 May 4;10(5):529. doi: 10.3390/antibiotics10050529.
2
[The history of the development and changes of quinolone antibacterial agents].[喹诺酮类抗菌药物的发展与变迁史]
Yakushigaku Zasshi. 2003;38(2):161-79.
3
Cheminformatics identification of phenolics as modulators of penicillin-binding protein-3 of towards interventive antibacterial therapy.通过 cheminformatics 鉴定酚类化合物作为青霉素结合蛋白 3 的调节剂,以实现干预性抗菌治疗。
J Biomol Struct Dyn. 2024 Jan-Feb;42(1):298-313. doi: 10.1080/07391102.2023.2192808. Epub 2023 Mar 28.
4
Identification of Mutations in the Gene Encoding PBP2 That Reduce Carbapenem and Diazabicyclooctane Susceptibility of Escherichia coli Clinical Isolates with Mutations in (PBP3) and Which Carry .鉴定编码 PBP2 的基因突变,这些突变可降低对具有(PBP3)突变的大肠埃希菌临床分离株的碳青霉烯类和二氮杂二环辛烷类的敏感性,这些分离株携带
mSphere. 2019 Jul 3;4(4):e00074-19. doi: 10.1128/mSphere.00074-19.
5
5-Carboxytetramethylrhodamine-Ampicillin Fluorescence Anisotropy-Based Assay of Escherichia coli Penicillin-Binding Protein 2 Transpeptidase Inhibition.基于5-羧基四甲基罗丹明-氨苄青霉素荧光各向异性的大肠杆菌青霉素结合蛋白2转肽酶抑制测定法
ACS Infect Dis. 2019 Jun 14;5(6):863-872. doi: 10.1021/acsinfecdis.8b00351. Epub 2019 Mar 19.
6
Penicillin-Binding Protein 3 Is Essential for Growth of Pseudomonas aeruginosa.青霉素结合蛋白3对铜绿假单胞菌的生长至关重要。
Antimicrob Agents Chemother. 2016 Dec 27;61(1). doi: 10.1128/AAC.01651-16. Print 2017 Jan.
7
Structural basis for effectiveness of siderophore-conjugated monocarbams against clinically relevant strains of Pseudomonas aeruginosa.铁载体偶联单碳青霉烯类化合物对临床相关铜绿假单胞菌的有效性的结构基础。
Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22002-7. doi: 10.1073/pnas.1013092107. Epub 2010 Dec 6.
8
WCK 5107 (Zidebactam) and WCK 5153 Are Novel Inhibitors of PBP2 Showing Potent "β-Lactam Enhancer" Activity against Pseudomonas aeruginosa, Including Multidrug-Resistant Metallo-β-Lactamase-Producing High-Risk Clones.WCK 5107(齐德巴坦)和WCK 5153是新型PBP2抑制剂,对铜绿假单胞菌表现出强大的“β-内酰胺增强剂”活性,包括产多重耐药金属β-内酰胺酶的高风险克隆株。
Antimicrob Agents Chemother. 2017 May 24;61(6). doi: 10.1128/AAC.02529-16. Print 2017 Jun.
9
Identification and characterization of the first class of potent bacterial acetyl-CoA carboxylase inhibitors with antibacterial activity.具有抗菌活性的第一类强效细菌乙酰辅酶A羧化酶抑制剂的鉴定与表征
J Biol Chem. 2004 Jun 18;279(25):26066-73. doi: 10.1074/jbc.M402989200. Epub 2004 Apr 2.
10
Influence of the α-Methoxy Group on the Reaction of Temocillin with Pseudomonas aeruginosa PBP3 and CTX-M-14 β-Lactamase.α-甲氧基对替莫西林与铜绿假单胞菌 PBP3 和 CTX-M-14 β-内酰胺酶反应的影响。
Antimicrob Agents Chemother. 2019 Dec 20;64(1). doi: 10.1128/AAC.01473-19.

引用本文的文献

1
Discovery and chemical optimisation of a potent, Bi-cyclic antimicrobial inhibitor of Escherichia coli PBP3.大肠杆菌PBP3强效双环抗菌抑制剂的发现与化学优化
Commun Biol. 2025 May 28;8(1):819. doi: 10.1038/s42003-025-08246-x.
2
Structural basis of penicillin binding protein 3 inhibition by the siderophore-antibiotic cefiderocol.铁载体抗生素头孢地尔对青霉素结合蛋白3的抑制作用的结构基础
Chem Sci. 2024 Sep 18;15(41):16928-37. doi: 10.1039/d4sc04937c.
3
Pyrrolidine-2,3-diones: heterocyclic scaffolds that inhibit and eradicate biofilms.

本文引用的文献

1
Structural Characterization of Diazabicyclooctane β-Lactam "Enhancers" in Complex with Penicillin-Binding Proteins PBP2 and PBP3 of Pseudomonas aeruginosa.与铜绿假单胞菌青霉素结合蛋白 PBP2 和 PBP3 复合物中二氮杂二环辛烷 β-内酰胺“增强剂”的结构特征。
mBio. 2021 Feb 16;12(1):e03058-20. doi: 10.1128/mBio.03058-20.
2
Protease inhibitors elicit anti-inflammatory effects in CF mice with Pseudomonas aeruginosa acute lung infection.蛋白酶抑制剂可在铜绿假单胞菌急性肺部感染的 CF 小鼠中发挥抗炎作用。
Clin Exp Immunol. 2021 Jan;203(1):87-95. doi: 10.1111/cei.13518. Epub 2020 Oct 12.
3
Regulation of peptidoglycan synthesis and remodelling.
吡咯烷-2,3-二酮:抑制和根除生物膜的杂环支架。
Chem Commun (Camb). 2024 Oct 8;60(81):11540-11543. doi: 10.1039/d4cc02708f.
4
Synthesis and computational evaluation of the antioxidant activity of pyrrolo[2,3-]quinoxaline derivatives.吡咯并[2,3 - ]喹喔啉衍生物抗氧化活性的合成与计算评估
RSC Adv. 2024 Aug 5;14(34):24438-24446. doi: 10.1039/d4ra03108c.
5
Identifying Novel Therapeutics for the Resistant Mutant "F533L" in PBP3 of Using ML Techniques.利用机器学习技术鉴定针对PBP3中抗性突变体“F533L”的新型疗法。
ACS Omega. 2024 Jun 14;9(26):28046-28060. doi: 10.1021/acsomega.4c00929. eCollection 2024 Jul 2.
6
Drug Discovery in the Field of β-Lactams: An Academic Perspective.β-内酰胺类药物研发:学术视角
Antibiotics (Basel). 2024 Jan 8;13(1):59. doi: 10.3390/antibiotics13010059.
7
Chemical genetic approaches for the discovery of bacterial cell wall inhibitors.用于发现细菌细胞壁抑制剂的化学遗传学方法。
RSC Med Chem. 2023 Aug 30;14(11):2125-2154. doi: 10.1039/d3md00143a. eCollection 2023 Nov 15.
8
Synthesis and evaluation of the antioxidant activity of 3-pyrroline-2-ones: experimental and theoretical insights.3-吡咯啉-2-酮的抗氧化活性的合成与评价:实验与理论见解
RSC Adv. 2022 Aug 30;12(38):24579-24588. doi: 10.1039/d2ra04640g.
9
Experimental and theoretical studies on the synthesis of 1,4,5-trisubstituted pyrrolidine-2,3-diones.1,4,5-三取代吡咯烷-2,3-二酮合成的实验与理论研究
Beilstein J Org Chem. 2022 Aug 31;18:1140-1153. doi: 10.3762/bjoc.18.118. eCollection 2022.
10
Amination of 5-Spiro-Substituted 3-Hydroxy-1,5-dihydro-2-pyrrol-2-ones.5-螺环取代的 3-羟基-1,5-二氢-2-吡咯-2-酮的氨化反应。
Molecules. 2021 Nov 26;26(23):7179. doi: 10.3390/molecules26237179.
肽聚糖合成和重塑的调控。
Nat Rev Microbiol. 2020 Aug;18(8):446-460. doi: 10.1038/s41579-020-0366-3. Epub 2020 May 18.
4
β-Lactam resistance development affects binding of penicillin-binding proteins (PBPs) of Clostridium perfringens to the fluorescent penicillin, BOCILLIN FL.β-内酰胺耐药性的发展会影响荧光青霉素 Bocillin FL 与梭菌属青霉素结合蛋白 (PBP) 的结合。
Anaerobe. 2020 Apr;62:102179. doi: 10.1016/j.anaerobe.2020.102179. Epub 2020 Feb 20.
5
Novel and Improved Crystal Structures of H. influenzae, E. coli and P. aeruginosa Penicillin-Binding Protein 3 (PBP3) and N. gonorrhoeae PBP2: Toward a Better Understanding of β-Lactam Target-Mediated Resistance.流感嗜血杆菌、大肠杆菌和铜绿假单胞菌青霉素结合蛋白 3(PBP3)以及淋病奈瑟菌 PBP2 的新型改良晶体结构:深入了解β-内酰胺类药物靶介导耐药性。
J Mol Biol. 2019 Aug 23;431(18):3501-3519. doi: 10.1016/j.jmb.2019.07.010. Epub 2019 Jul 10.
6
Cystic Fibrosis and Pseudomonas aeruginosa: the Host-Microbe Interface.囊性纤维化与铜绿假单胞菌:宿主-微生物界面。
Clin Microbiol Rev. 2019 May 29;32(3). doi: 10.1128/CMR.00138-18. Print 2019 Jun 19.
7
FtsW is a peptidoglycan polymerase that is functional only in complex with its cognate penicillin-binding protein.FtsW 是一种只有与其同源青霉素结合蛋白形成复合物时才具有功能的肽聚糖聚合酶。
Nat Microbiol. 2019 Apr;4(4):587-594. doi: 10.1038/s41564-018-0345-x. Epub 2019 Jan 28.
8
Docking- and pharmacophore-based virtual screening for the identification of novel Mycobacterium tuberculosis protein tyrosine phosphatase B (MptpB) inhibitor with a thiobarbiturate scaffold.基于对接和药效基团的虚拟筛选鉴定新型结核分枝杆菌蛋白酪氨酸磷酸酶 B(MptpB)抑制剂,该抑制剂具有硫代巴比妥酸骨架。
Bioorg Chem. 2019 Apr;85:229-239. doi: 10.1016/j.bioorg.2018.12.038. Epub 2018 Dec 31.
9
Strategic Approaches to Overcome Resistance against Gram-Negative Pathogens Using β-Lactamase Inhibitors and β-Lactam Enhancers: Activity of Three Novel Diazabicyclooctanes WCK 5153, Zidebactam (WCK 5107), and WCK 4234.使用β-内酰胺酶抑制剂和β-内酰胺增强剂克服革兰氏阴性病原体耐药性的策略:三种新型二氮杂二环辛烷 WCK 5153、齐他培南(WCK 5107)和 WCK 4234 的活性。
J Med Chem. 2018 May 10;61(9):4067-4086. doi: 10.1021/acs.jmedchem.8b00091. Epub 2018 Apr 20.
10
Kinetic Evidence for a Second Ligand Binding Site on Streptococcus pneumoniae Penicillin-Binding Protein 2x.肺炎链球菌青霉素结合蛋白2x上第二个配体结合位点的动力学证据
Biochemistry. 2018 Mar 20;57(11):1758-1766. doi: 10.1021/acs.biochem.7b01209. Epub 2018 Feb 27.