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吡咯烷-2,3-二酮作为青霉素结合蛋白3新型抑制剂的发现。

Discovery of Pyrrolidine-2,3-diones as Novel Inhibitors of PBP3.

作者信息

López-Pérez Arancha, Freischem Stefan, Grimm Immanuel, Weiergräber Oliver, Dingley Andrew J, López-Alberca María Pascual, Waldmann Herbert, Vollmer Waldemar, Kumar Kamal, Vuong Cuong

机构信息

AiCuris Anti-Infectives Cures GmbH, 42117 Wuppertal, Germany.

Centre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Type NE2 4AX, UK.

出版信息

Antibiotics (Basel). 2021 May 4;10(5):529. doi: 10.3390/antibiotics10050529.

Abstract

The alarming threat of the spread of multidrug resistant bacteria currently leaves clinicians with very limited options to combat infections, especially those from Gram-negative bacteria. Hence, innovative strategies to deliver the next generation of antibacterials are urgently needed. Penicillin binding proteins (PBPs) are proven targets inhibited by β-lactam antibiotics. To discover novel, non-β-lactam inhibitors against PBP3 of , we optimised a fluorescence assay based on a well-known thioester artificial substrate and performed a target screening using a focused protease-targeted library of 2455 compounds, which led to the identification of pyrrolidine-2,3-dione as a potential scaffold to inhibit the PBP3 target. Further chemical optimisation using a one-pot three-component reaction protocol delivered compounds with excellent target inhibition, initial antibacterial activities against and no apparent cytotoxicity. Our investigation revealed the key structural features; for instance, 3-hydroxyl group (R) and a heteroaryl group (R) appended to the -pyrroldine-2,3-dione via methylene linker required for target inhibition. Overall, the discovery of the pyrrolidine-2,3-dione class of inhibitors of PBP3 brings opportunities to target multidrug-resistant bacterial strains and calls for further optimisation to improve antibacterial activity against .

摘要

多重耐药细菌传播带来的惊人威胁,使得临床医生对抗感染的选择非常有限,尤其是针对革兰氏阴性菌引起的感染。因此,迫切需要创新策略来递送新一代抗菌药物。青霉素结合蛋白(PBPs)是已被证实的受β-内酰胺抗生素抑制的靶点。为了发现针对[具体细菌名称未给出]的PBP3的新型非β-内酰胺抑制剂,我们基于一种著名的硫酯人工底物优化了一种荧光测定法,并使用一个包含2455种化合物的聚焦蛋白酶靶向文库进行了靶点筛选,这导致鉴定出吡咯烷-2,3-二酮作为抑制PBP3靶点的潜在骨架。使用一锅三组分反应方案进行进一步的化学优化,得到了具有优异靶点抑制作用、对[具体细菌名称未给出]的初步抗菌活性且无明显细胞毒性的化合物。我们的研究揭示了关键结构特征;例如,通过亚甲基连接基连接到吡咯烷-2,3-二酮上的3-羟基基团(R)和杂芳基基团(R)是靶点抑制所必需的。总体而言,PBP3的吡咯烷-2,3-二酮类抑制剂的发现为靶向多重耐药细菌菌株带来了机会,并需要进一步优化以提高对[具体细菌名称未给出]的抗菌活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c30/8147781/9059f241e270/antibiotics-10-00529-g0A1.jpg

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