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DEER 分析 GPCR 构象异质性。

DEER Analysis of GPCR Conformational Heterogeneity.

机构信息

Jules Stein Eye Institute and Department of Chemistry and Biochemistry, University of California, Los Angeles, CA 90095, USA.

出版信息

Biomolecules. 2021 May 22;11(6):778. doi: 10.3390/biom11060778.

Abstract

G protein-coupled receptors (GPCRs) represent a large class of transmembrane helical proteins which are involved in numerous physiological signaling pathways and therefore represent crucial pharmacological targets. GPCR function and the action of therapeutic molecules are defined by only a few parameters, including receptor basal activity, ligand affinity, intrinsic efficacy and signal bias. These parameters are encoded in characteristic receptor conformations existing in equilibrium and their populations, which are thus of paramount interest for the understanding of receptor (mal-)functions and rational design of improved therapeutics. To this end, the combination of site-directed spin labeling and EPR spectroscopy, in particular double electron-electron resonance (DEER), is exceedingly valuable as it has access to sub-Angstrom spatial resolution and provides a detailed picture of the number and populations of conformations in equilibrium. This review gives an overview of existing DEER studies on GPCRs with a focus on the delineation of structure/function frameworks, highlighting recent developments in data analysis and visualization. We introduce "conformational efficacy" as a parameter to describe ligand-specific shifts in the conformational equilibrium, taking into account the loose coupling between receptor segments observed for different GPCRs using DEER.

摘要

G 蛋白偶联受体 (GPCRs) 是一大类跨膜螺旋蛋白,参与众多生理信号通路,因此是重要的药理学靶点。GPCR 的功能和治疗分子的作用由几个参数定义,包括受体基础活性、配体亲和力、内在效力和信号偏向。这些参数编码在特征性的受体构象中,这些构象存在于平衡状态及其群体中,因此对于理解受体(异常)功能和合理设计改进的治疗方法至关重要。为此,定向点自旋标记和 EPR 光谱学(特别是双电子-电子共振 (DEER))的结合非常有价值,因为它可以达到亚埃分辨率,并提供平衡构象的数量和群体的详细信息。本综述介绍了关于 GPCR 的现有 DEER 研究,重点介绍了结构/功能框架的描绘,强调了数据分析和可视化的最新进展。我们引入了“构象效力”作为一个参数来描述配体特异性的构象平衡移位,同时考虑到使用 DEER 观察到不同 GPCR 之间受体片段的松散偶联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfbf/8224605/5fd05ca6907e/biomolecules-11-00778-g001.jpg

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