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鉴定和验证. 中基因表达分析的参考基因

Identification and Validation of Reference Genes for Gene Expression Analysis in .

机构信息

Research Institute of Subtropical Forestry, Chinese Academy of Forestry, Hangzhou 311400, China.

College of Landscape Architecture, Nanjing Forestry University, Nanjing 210037, China.

出版信息

Genes (Basel). 2021 May 13;12(5):732. doi: 10.3390/genes12050732.

Abstract

Real-time quantitative PCR (RT-qPCR) is a reliable and high-throughput technique for gene expression studies, but its accuracy depends on the expression stability of reference genes. is a fast-growing timber species with strong resistance. However, thus far, reliable reference gene identifications have not been reported in . In this study, 19 candidate reference genes were selected and evaluated for their expression stability in different tissues of . Three software programs (geNorm, NormFinder, and BestKeeper) were used to evaluate the reference gene transcript stabilities, and comprehensive stability ranking was generated by the geometric mean method. Our results show that was the most stable reference gene and that + was the best reference gene combination for different tissues. Finally, the stable and less stable reference genes were verified using expression in different tissues. To our knowledge, this is the first report to verify appropriate reference genes for normalizing gene expression in for different tissues, which will facilitate the future elucidation of gene regulations in this species and useful references for relative species.

摘要

实时荧光定量 PCR(RT-qPCR)是一种可靠的高通量技术,可用于基因表达研究,但它的准确性取决于参考基因的表达稳定性。 是一种生长迅速的木材树种,具有很强的抗性。然而,迄今为止,尚未在 中报告可靠的参考基因鉴定。在本研究中,选择了 19 个候选参考基因,并评估了它们在 不同组织中的表达稳定性。使用三个软件程序(geNorm、NormFinder 和 BestKeeper)评估参考基因转录本的稳定性,并通过几何平均法生成综合稳定性排名。我们的结果表明, 是最稳定的参考基因,而 + 是不同组织中最佳的参考基因组合。最后,使用 不同组织中的表达验证了稳定和不稳定的参考基因。据我们所知,这是首次报告在 不同组织中验证 合适的参考基因以标准化基因表达,这将有助于未来阐明该物种中的基因调控,并为相关物种提供有用的参考。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7cfa/8153319/1d459059c4fa/genes-12-00732-g001.jpg

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