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芝麻(Sesamum indicum L.)中nsLTP基因家族的全基因组分析及对高油积累的贡献鉴定

Genome-Wide Analysis of nsLTP Gene Family and Identification of Contributing to High Oil Accumulation in Sesame ( L.).

作者信息

Song Shengnan, You Jun, Shi Lisong, Sheng Chen, Zhou Wangyi, Dossou Senouwa Segla Koffi, Dossa Komivi, Wang Linhai, Zhang Xiurong

机构信息

Key Laboratory of Biology and Genetic Improvement of Oil Crops, Ministry of Agriculture, Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan 430062, China.

Shijiazhuang Academy of Agricultural and Forestry Sciences, Shijiazhuang 050041, China.

出版信息

Int J Mol Sci. 2021 May 18;22(10):5291. doi: 10.3390/ijms22105291.

Abstract

The biosynthesis and storage of lipids in oil crop seeds involve many gene families, such as nonspecific lipid-transfer proteins (nsLTPs). nsLTPs are cysteine-rich small basic proteins essential for plant development and survival. However, in sesame, information related to nsLTPs was limited. Thus, the objectives of this study were to identify the nsLTPs () and reveal their potential role in oil accumulation in sesame seeds. Genome-wide analysis revealed 52 , nonrandomly distributed on 10 chromosomes in the sesame variety Zhongzhi 13. Following recent classification methods, the were divided into nine types, among which types I and XI were the dominants. We found that the could interact with several transcription factors, including APETALA2 (AP2), DNA binding with one finger (Dof), etc. Transcriptome analysis showed a tissue-specific expression of some genes. By integrating the expression profiles and the weighted gene co-expression network analysis (WGCNA) results of two contrasting oil content sesame varieties, we identified and as the candidate genes for high oil content in sesame seeds. The presumed functions of the candidate gene were validated through overexpression of in . These findings expand our knowledge on nsLTPs in sesame and provide resources for functional studies and genetic improvement of oil content in sesame seeds.

摘要

油料作物种子中脂质的生物合成和储存涉及许多基因家族,如非特异性脂质转移蛋白(nsLTPs)。nsLTPs是富含半胱氨酸的小碱性蛋白,对植物发育和存活至关重要。然而,在芝麻中,与nsLTPs相关的信息有限。因此,本研究的目的是鉴定芝麻中的nsLTPs,并揭示它们在芝麻种子油脂积累中的潜在作用。全基因组分析揭示了52个nsLTPs,它们非随机分布在芝麻品种中芝13的10条染色体上。按照最近的分类方法,这些nsLTPs被分为九种类型,其中I型和XI型占主导。我们发现这些nsLTPs可以与几种转录因子相互作用,包括APETALA2(AP2)、单指DNA结合蛋白(Dof)等。转录组分析显示一些nsLTPs基因具有组织特异性表达。通过整合两个含油量相反的芝麻品种的nsLTPs表达谱和加权基因共表达网络分析(WGCNA)结果,我们鉴定出nsLTP2和nsLTP4为芝麻种子高含油量的候选基因。通过在拟南芥中过表达nsLTP2和nsLTP4验证了候选基因的推测功能。这些发现扩展了我们对芝麻中nsLTPs的认识,并为芝麻种子含油量的功能研究和遗传改良提供了资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cfdb/8157352/b3bb2fdfe970/ijms-22-05291-g001.jpg

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