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宏基因组测序用于探索陆地蓝细菌的系统发育基因组学

Metagenome Sequencing to Explore Phylogenomics of Terrestrial Cyanobacteria.

作者信息

Ward Ryan D, Stajich Jason E, Johansen Jeffrey R, Huntemann Marcel, Clum Alicia, Foster Brian, Foster Bryce, Roux Simon, Palaniappan Krishnaveni, Varghese Neha, Mukherjee Supratim, Reddy T B K, Daum Chris, Copeland Alex, Chen I-M A, Ivanova Natalia N, Kyrpides Nikos C, Shapiro Nicole, Eloe-Fadrosh Emiley A, Pietrasiak Nicole

机构信息

Plant and Environmental Sciences Department, New Mexico State University, Las Cruces, New Mexico, USA.

Laboratory of Genetics, University of Wisconsin-Madison, Madison, Wisconsin, USA.

出版信息

Microbiol Resour Announc. 2021 Jun 3;10(22):e0025821. doi: 10.1128/MRA.00258-21.

DOI:10.1128/MRA.00258-21
PMID:34080906
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8354539/
Abstract

Cyanobacteria are ubiquitous microorganisms with crucial ecosystem functions, yet most knowledge of their biology relates to aquatic taxa. We have constructed metagenomes for 50 taxonomically well-characterized terrestrial cyanobacterial cultures. These data will support phylogenomic studies of evolutionary relationships and gene content among these unique algae and their aquatic relatives.

摘要

蓝细菌是具有关键生态系统功能的无处不在的微生物,但我们对其生物学的了解大多与水生类群有关。我们构建了50种分类特征明确的陆地蓝细菌培养物的宏基因组。这些数据将支持对这些独特藻类及其水生亲缘物种之间进化关系和基因含量的系统基因组学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efef/8354539/59e8d0158dda/mra.00258-21-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efef/8354539/59e8d0158dda/mra.00258-21-f001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efef/8354539/59e8d0158dda/mra.00258-21-f001.jpg

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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities.IMG/M 数据管理与分析系统 v.6.0:新增工具和高级功能。
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When Is A Lineage A Species? A Case Study In Myxacorys gen. nov. (Synechococcales: Cyanobacteria) With The Description of Two New Species From The Americas.
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iScience. 2023 Jul 10;26(8):107338. doi: 10.1016/j.isci.2023.107338. eCollection 2023 Aug 18.
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