Moreno-Pino Mario, Ugalde Juan A, Valdés Jorge H, Rodríguez-Marconi Susana, Parada-Pozo Génesis, Trefault Nicole
GEMA Center for Genomics, Ecology and Environment, Faculty of Sciences, Universidad Mayor, Santiago, Chile.
Millennium Initiative for Collaborative Research on Bacterial Resistance (MICROB-R), Santiago, Chile.
Front Microbiol. 2021 Jun 10;12:660779. doi: 10.3389/fmicb.2021.660779. eCollection 2021.
Antarctic sponges harbor a diverse range of microorganisms that perform unique metabolic functions for nutrient cycles. Understanding how microorganisms establish functional sponge-microbe interactions in the Antarctic marine ecosystem provides clues about the success of these ancient animals in this realm. Here, we use a culture-dependent approach and genome sequencing to investigate the molecular determinants that promote a dual lifestyle in three bacterial genera , , and . Phylogenomic analyses showed that four sponge-associated isolates represent putative novel bacterial species within the and genera and that the fifth bacterial isolate corresponds to . We inferred that isolated sponge-associated bacteria inhabit similarly marine sponges and also seawater. Comparative genomics revealed that these sponge-associated bacteria are enriched in symbiotic lifestyle-related genes. Specific adaptations related to the cold Antarctic environment are features of the bacterial strains isolated here. Furthermore, we showed evidence that the vitamin B5 synthesis-related gene, E from E16_7 and E16_10, was laterally transferred within Actinobacteria members. Together, these findings indicate that the genomes of sponge-associated strains differ from other related genomes based on mechanisms that may contribute to the life in association with sponges and the extreme conditions of the Antarctic environment.
南极海绵体内含有多种微生物,这些微生物在营养循环中发挥着独特的代谢功能。了解微生物如何在南极海洋生态系统中建立功能性的海绵 - 微生物相互作用,可为这些古老动物在该领域的成功生存提供线索。在此,我们采用依赖培养的方法和基因组测序技术,来研究促进三个细菌属( 、 和 )双重生活方式的分子决定因素。系统发育基因组学分析表明,四个与海绵相关的分离株代表了 属和 属内假定的新细菌物种,第五个细菌分离株对应于 。我们推断,分离出的与海绵相关的细菌同样栖息于海洋海绵和海水中。比较基因组学研究表明,这些与海绵相关的细菌富含与共生生活方式相关的基因。与寒冷南极环境相关的特定适应性是这里分离出的细菌菌株的特征。此外,我们还证明了来自 E16_7 和 E16_10 的维生素 B5 合成相关基因 E 在放线菌成员之间发生了横向转移。总之,这些发现表明,基于可能有助于与海绵共生生活以及适应南极极端环境条件的机制,与海绵相关的菌株基因组不同于其他相关基因组。