Kavanaugh David H, Maddison David R, Simison W Brian, Schoville Sean D, Schmidt Joachim, Faille Arnaud, Moore Wendy, Pflug James M, Archambeault Sophie L, Hoang Tinya, Chen Jei-Ying
Department of Entomology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA.
Department of Integrative Biology, Oregon State University, Corvallis, OR 97331, USA.
Zookeys. 2021 Jun 16;1044:41-152. doi: 10.3897/zookeys.1044.62245. eCollection 2021.
The phylogeny of the carabid beetle supertribe Nebriitae is inferred from analyses of DNA sequence data from eight gene fragments including one nuclear ribosomal gene (28S), four nuclear-protein coding genes (CAD, topoisomerase 1, PEPCK, and ), and three mitochondrial gene fragments (16S + tRNA-Leu + ND1, COI ("barcode" region) and COI ("Pat/Jer" region)). Our taxon sample included 264 exemplars representing 241 species and subspecies (25% of the known nebriite fauna), 39 of 41 currently accepted genera and subgenera (all except and ), and eight outgroup taxa. Separate maximum likelihood (ML) analyses of individual genes, combined ML analyses of nuclear, nuclear protein-coding, and mitochondrial genes, and combined ML and Bayesian analyses of the eight-gene-fragment matrix resulted in a well-resolved phylogeny of the supertribe, with most nodes in the tree strongly supported. Within Nebriitae, 167 internal nodes of the tree (out of the maximum possible 255) are supported by maximum-likelihood bootstrap values of 90% or more. The tribes Notiophilini, Opisthiini, Pelophilini, and Nebriini are well supported as monophyletic but relationships among these are not well resolved. is a distinct genus more closely related to than . , , , and , previously treated as distinct genera by some authors, are all nested within a monophyletic genus Within , four major clades are recognized: (1) the Series, including eight subgenera arrayed in two subgeneric complexes (the and Complexes); (2) the Nebriola Series, including only subgenus Nebriola; (3) the Series, including ten subgenera arrayed in two subgeneric complexes, the and Complexes, with the latter further subdivided into three subgeneric subcomplexes (the , , and Subcomplexes)); and (4) the Series, including seven subgenera arrayed in two subgeneric complexes (the and Complexes). A strong concordance of biogeography with the inferred phylogeny is noted and some evident vicariance patterns are highlighted. A revised classification, mainly within the Nebriini, is proposed to reflect the inferred phylogeny. Three genus-group taxa (, and ) are given revised status and seven are recognized as new synonymies ( Jeannel, 1941 and Huber, 2014 = Daniel, 1903; Ledoux & Roux, 1989 = Jeannel, 1937; Bänninger, 1923, Jeannel, 1937 and Huber & Schmidt, 2017 = Daniel & Daniel, 1904; and Shilenkov, 1982 = Andrewes, 1923). Six new subgenera are proposed and described for newly recognized clades: Parepinebriola Kavanaugh subgen. nov. (type species: Huber & Schmidt, 2017), Insulanebria Kavanaugh subgen. nov. (type species: Eschscholtz, 1829), Erwinebria Kavanaugh subgen. nov. (type species Fischer von Waldheim, 1828), Kavanaugh (type species: Darlington, 1931), Kavanaugh (type species: LeConte, 1878), and Kavanaugh (type species: Gebler, 1847). Future efforts to better understand relationships within the supertribe should aim to expand the taxon sampling of DNA sequence data, particularly within subgenera and us of genus and the Complex of genus .
通过对八个基因片段的DNA序列数据进行分析,推断出步甲科超族Nebriitae的系统发育,这八个基因片段包括一个核糖体基因(28S)、四个核蛋白编码基因(CAD、拓扑异构酶1、磷酸烯醇式丙酮酸羧激酶和 )以及三个线粒体基因片段(16S + 亮氨酸转运RNA + ND1、细胞色素氧化酶亚基I(“条形码”区域)和细胞色素氧化酶亚基I(“Pat/Jer”区域))。我们的分类单元样本包括代表241个物种和亚种(占已知nebriite动物群的25%)的264个标本、41个目前公认的属和亚属中的39个(除 和 外全部)以及八个外类群分类单元。对单个基因进行单独的最大似然(ML)分析、对核基因、核蛋白编码基因和线粒体基因进行联合ML分析以及对八基因片段矩阵进行联合ML和贝叶斯分析,得出了一个解析良好的超族系统发育树,树中的大多数节点得到了有力支持。在Nebriitae内,树的167个内部节点(在最多可能的255个节点中)得到了90%或更高的最大似然自展值的支持。Notiophilini族、Opisthiini族、Pelophilini族和Nebriini族被有力支持为单系群,但它们之间的关系尚未得到很好的解析。 是一个与 比与 关系更密切的独特属。 、 、 和 ,一些作者先前将它们视为不同的属,现在都嵌套在一个单系属 内。在 内,识别出四个主要分支:(1) 系列,包括排列在两个亚属复合体( 和 复合体)中的八个亚属;(2)Nebriola系列,仅包括亚属Nebriola;(3) 系列,包括排列在两个亚属复合体,即 和 复合体中的十个亚属,后者进一步细分为三个亚属亚复合体( 、 和 亚复合体);(4) 系列,包括排列在两个亚属复合体( 和 复合体)中的七个亚属。注意到生物地理学与推断的系统发育有很强的一致性,并突出了一些明显的间断分布模式。提出了一个主要在Nebriini内的修订分类,以反映推断的系统发育。三个属级分类单元( 、 和 )被赋予修订后的地位,七个被确认为新的同物异名(Jeannel,1941年的 和Huber,2014年的 = Daniel,1903年的 ;Ledoux & Roux,1989年 的 = Jeannel,1937年的 ;Bänninger,1923年的 、Jeannel,1937年的 和Huber & Schmidt,2017年的 = Daniel & Daniel,1904年的 ;以及Shilenkov,1982年的 = Andrewes,1923年 的 )。为新识别的分支提出并描述了六个新亚属:Parepinebriola Kavanaugh亚属新名(模式种:Huber & Schmidt,2017年的 )、Insulanebria Kavanaugh亚属新名(模式种:Eschscholtz,1829年的 )、Erwinebria Kavanaugh亚属新名(模式种Fischer von Waldheim,1828年的 )、 Kavanaugh (模式种:Darlington,1931年的 )、 Kavanaugh (模式种:LeConte,1878年的 )和 Kavanaugh (模式种:Gebler,1847年的 )。未来为更好地理解超族内关系所做的努力应旨在扩大DNA序列数据的分类单元采样,特别是在 属的 和 亚属以及 属的 复合体内。