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一种基于片段的方法,用于评估[具体物种]L-精氨酸生物合成途径中ArgB、ArgC、ArgD和ArgF的可配体性。

A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of .

作者信息

Gupta Pooja, Thomas Sherine E, Zaidan Shaymaa A, Pasillas Maria A, Cory-Wright James, Sebastián-Pérez Víctor, Burgess Ailidh, Cattermole Emma, Meghir Clio, Abell Chris, Coyne Anthony G, Jacobs William R, Blundell Tom L, Tiwari Sangeeta, Mendes Vítor

机构信息

Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, UK.

Department of Biological Sciences & Border Biomedical Research Centre, University of Texas at El Paso, El Paso, TX 79968, USA.

出版信息

Comput Struct Biotechnol J. 2021 Jun 4;19:3491-3506. doi: 10.1016/j.csbj.2021.06.006. eCollection 2021.

Abstract

The L-arginine biosynthesis pathway consists of eight enzymes that catalyse the conversion of L-glutamate to L-arginine. Arginine auxotrophs (argB/argF deletion mutants) of are rapidly sterilised in mice, while inhibition of ArgJ with Pranlukast was found to clear chronic infection in a mouse model. Enzymes in the arginine biosynthetic pathway have therefore emerged as promising targets for anti-tuberculosis drug discovery. In this work, the ligandability of four enzymes of the pathway ArgB, ArgC, ArgD and ArgF is assessed using a fragment-based approach. We identify several hits against these enzymes validated with biochemical and biophysical assays, as well as X-ray crystallographic data, which in the case of ArgB were further confirmed to have on-target activity against . These results demonstrate the potential for more enzymes in this pathway to be targeted with dedicated drug discovery programmes.

摘要

L-精氨酸生物合成途径由八种酶组成,这些酶催化L-谷氨酸转化为L-精氨酸。结核分枝杆菌的精氨酸营养缺陷型(argB/argF缺失突变体)在小鼠体内会迅速被清除,而在小鼠模型中发现用普仑司特抑制ArgJ可清除慢性感染。因此,精氨酸生物合成途径中的酶已成为抗结核药物研发的有前景的靶点。在这项工作中,使用基于片段的方法评估了该途径中四种酶ArgB、ArgC、ArgD和ArgF的可配体性。我们通过生化和生物物理测定以及X射线晶体学数据鉴定了针对这些酶的几个命中片段,就ArgB而言,这些数据进一步证实了其对结核分枝杆菌具有靶向活性。这些结果表明,该途径中更多的酶有可能通过专门的药物研发计划作为靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1186/8220418/05ca9e9d6533/ga1.jpg

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