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One- and two-dimensional NMR studies on the conformation of DNA containing the oligo(dA)oligo(dT) tract.
Nucleic Acids Res. 1988 Sep 12;16(17):8619-32. doi: 10.1093/nar/16.17.8619.
2
A new model for the bending of DNAs containing the oligo(dA) tracts based on NMR observations.
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3
NMR studies of a deoxyribodecanucleotide containing an extrahelical thymidine surrounded by an oligo(dA).oligo(dT) tract.
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4
A new model for DNA bending on the basis of gradual compression of the minor groove from 5' to 3' along the oligo(dA) tract.
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5
Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
Biopolymers. 1990;30(5-6):563-81. doi: 10.1002/bip.360300509.
6
Netropsin specifically recognizes one of the two conformationally equivalent strands of poly(dA).poly(dT). One dimensional NMR study at 500 MHz involving NOE transfer between netropsin and DNA protons.
J Biomol Struct Dyn. 1985 Jun;2(6):1085-95. doi: 10.1080/07391102.1985.10507625.
7
DNA with adenine tracts contains poly(dA).poly(dT) conformational features in solution.
Nucleic Acids Res. 1990 Mar 25;18(6):1559-64. doi: 10.1093/nar/18.6.1559.
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Determination of nucleic acid backbone conformation by 1H NMR.
Biochemistry. 1992 Apr 14;31(14):3564-74. doi: 10.1021/bi00129a003.
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High-resolution NMR study of a synthetic DNA-RNA hybrid dodecamer containing the consensus pribnow promoter sequence: d(CGTTATAATGCG).r(CGCAUUAUAACG).
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10
Anomalous structure and properties of poly (dA).poly(dT). Computer simulation of the polynucleotide structure with the spine of hydration in the minor groove.
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引用本文的文献
1
Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations.
Biochemistry. 2012 Oct 30;51(43):8654-64. doi: 10.1021/bi3009517. Epub 2012 Oct 18.
2
Monovalent cation binding in the minor groove of DNA A-tracts.
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3
Structural analysis of the binding modes of minor groove ligands comprised of disubstituted benzenes.
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4
Sequence-dependent variation in DNA minor groove width dictates orientational preference of Hoechst 33258 in A-tract recognition: solution NMR structure of the 2:1 complex with d(CTTTTGCAAAAG)(2).
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Sequence-dependent dynamics of TATA-Box binding sites.
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Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.
Nucleic Acids Res. 1996 May 1;24(9):1632-7. doi: 10.1093/nar/24.9.1632.
7
NMR studies of G:A mismatches in oligodeoxyribonucleotide duplexes modelled after ribozymes.
Nucleic Acids Res. 1993 Nov 25;21(23):5418-24. doi: 10.1093/nar/21.23.5418.
8
Unusual conformation of a 3'-thioformacetal linkage in a DNA duplex.
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9
Formation of sheared G:A base pairs in an RNA duplex modelled after ribozymes, as revealed by NMR.
Nucleic Acids Res. 1994 Jul 25;22(14):2752-9. doi: 10.1093/nar/22.14.2752.
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Structural basis for DNA bending.
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Crystal structure analysis of a complete turn of B-DNA.
Nature. 1980 Oct 23;287(5784):755-8. doi: 10.1038/287755a0.
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Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG.
J Biol Chem. 1982 Dec 25;257(24):14686-707.
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Kinematic model for B-DNA.
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Heteronomous DNA.
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Proton nuclear Overhauser effect study of the structure of a deoxyoligonucleotide duplex in aqueous solution.
Biochemistry. 1983 Apr 12;22(8):2019-25. doi: 10.1021/bi00277a044.
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Sequence-dependent structural variations in two right-handed alternating pyrimidine-purine DNA oligomers in solution determined by nuclear Overhauser enhancement measurements.
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Proton nuclear magnetic resonance investigation of the conformation and dynamics in the synthetic deoxyribonucleic acid decamers d(ATATCGATAT) and d(ATATGCATAT).
Biochemistry. 1983 Dec 6;22(25):5930-42. doi: 10.1021/bi00294a037.
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Synthesis and conformational studies of ribooligonucleotides which contain an alternating C-G sequence and show unusual circular dichroism spectra.
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DNA structural variations in the E. coli tyrT promoter.
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The locus of sequence-directed and protein-induced DNA bending.
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