（Retz.）Nees ex Wight & Arn.（稻亚科，禾本科）叶绿体全基因组特征分析
Characterization of the Complete Chloroplast Genome of (Retz.) Nees ex Wight & Arn. (Zizaniinae, Poaceae).
作者信息
Wang Haoqi, Wu Zhiqiang, Fan Guohua, Zheng Gang, Gu Cuihua, Tembrock Luke R, Yang Zuoren, Yang Jiankang, Wang Jie
机构信息
Zhengzhou Research Base, State Key Laboratory of Cotton Biology, Zhengzhou University, Zhengzhou, China.
Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
出版信息
Mitochondrial DNA B Resour. 2021 Jun 22;6(7):1949-1950. doi: 10.1080/23802359.2021.1935352.
The complete chloroplast genome sequence of was sequenced, assembled and published for the first time here. The chloroplast genome was 135,681 bp in length and comprised of a large single-copy (LSC, 81,532 bp) region and a small single-copy (SSC, 12,383 bp) region interspersed by two inverted repeats (IRs, 20,883 bp). Gene annotation resulted in the identification of 113 unique genes including 79 protein-coding genes, 30 transfer RNA (tRNA) genes, and four ribosomal RNA (rRNA) genes. In addition, 118 simple sequence repeats (SSRs) and 47 long repeats were identified. Phylogenetic analysis based on maximum likelihood analysis (ML) resolved the placement of sister to a clade of and .
在此首次对其完整的叶绿体基因组序列进行了测序、组装和发表。叶绿体基因组长度为135,681 bp，由一个大单拷贝（LSC，81,532 bp）区域和一个小单拷贝（SSC，12,383 bp）区域组成，这两个区域被两个反向重复序列（IRs，20,883 bp）隔开。基因注释鉴定出113个独特基因，包括79个蛋白质编码基因、30个转运RNA（tRNA）基因和4个核糖体RNA（rRNA）基因。此外，还鉴定出118个简单序列重复（SSR）和47个长重复序列。基于最大似然分析（ML）的系统发育分析确定了其在 与 的一个分支的姐妹位置。
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