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构建稳健的假单胞菌细胞工厂以容纳新型生物合成途径。

Towards robust Pseudomonas cell factories to harbour novel biosynthetic pathways.

机构信息

Institute of Molecular Enzyme Technology, Heinrich-Heine-University, Düsseldorf, Germany.

Institute of Bio- and Geosciences IBG-1: Biotechnology, Forschungszentrum Jülich, Germany.

出版信息

Essays Biochem. 2021 Jul 26;65(2):319-336. doi: 10.1042/EBC20200173.

DOI:10.1042/EBC20200173
PMID:34223620
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8314020/
Abstract

Biotechnological production in bacteria enables access to numerous valuable chemical compounds. Nowadays, advanced molecular genetic toolsets, enzyme engineering as well as the combinatorial use of biocatalysts, pathways, and circuits even bring new-to-nature compounds within reach. However, the associated substrates and biosynthetic products often cause severe chemical stress to the bacterial hosts. Species of the Pseudomonas clade thus represent especially valuable chassis as they are endowed with multiple stress response mechanisms, which allow them to cope with a variety of harmful chemicals. A built-in cell envelope stress response enables fast adaptations that sustain membrane integrity under adverse conditions. Further, effective export machineries can prevent intracellular accumulation of diverse harmful compounds. Finally, toxic chemicals such as reactive aldehydes can be eliminated by oxidation and stress-induced damage can be recovered. Exploiting and engineering these features will be essential to support an effective production of natural compounds and new chemicals. In this article, we therefore discuss major resistance strategies of Pseudomonads along with approaches pursued for their targeted exploitation and engineering in a biotechnological context. We further highlight strategies for the identification of yet unknown tolerance-associated genes and their utilisation for engineering next-generation chassis and finally discuss effective measures for pathway fine-tuning to establish stable cell factories for the effective production of natural compounds and novel biochemicals.

摘要

在细菌中进行生物技术生产可以获得许多有价值的化学化合物。如今,先进的分子遗传工具、酶工程以及生物催化剂、途径和电路的组合使用,甚至使自然界中没有的化合物触手可及。然而,相关的底物和生物合成产物常常给细菌宿主带来严重的化学压力。假单胞菌属的物种因此代表了特别有价值的底盘,因为它们具有多种应激反应机制,使它们能够应对各种有害化学品。内置的细胞膜应激反应使它们能够在不利条件下快速适应,维持细胞膜的完整性。此外,有效的出口机制可以防止各种有害化合物在细胞内积累。最后,反应性醛等有毒化学物质可以通过氧化消除,应激诱导的损伤可以得到恢复。利用和工程化这些特性对于支持天然化合物和新化学物质的有效生产至关重要。因此,本文讨论了假单胞菌的主要抗性策略,以及在生物技术背景下针对这些策略进行靶向利用和工程化的方法。我们还强调了鉴定未知的与耐受相关基因的策略,并利用这些基因来工程化下一代底盘,最后讨论了有效调整途径的措施,以建立稳定的细胞工厂,用于有效生产天然化合物和新型生化物质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/4fde20b9b527/ebc-65-ebc20200173-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/124011ea5093/ebc-65-ebc20200173-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/5170d9a998c0/ebc-65-ebc20200173-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/4fde20b9b527/ebc-65-ebc20200173-g3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/124011ea5093/ebc-65-ebc20200173-g1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/5170d9a998c0/ebc-65-ebc20200173-g2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1fed/8314020/4fde20b9b527/ebc-65-ebc20200173-g3.jpg

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