Microbiology Research Unit, Division of Oral Biosciences, Dublin Dental University Hospital, Trinity College, University of Dublin, Dublin, Ireland.
Australian Institute of Tropical Health and Medicine, Townsville, Queensland, Australia.
Microb Genom. 2021 Jul;7(7). doi: 10.1099/mgen.0.000601.
This study investigated the evolution and epidemiology of the community-associated and multidrug-resistant clone European CC1-MRSA-IV. Whole-genome sequences were obtained for 194 European CC1-MRSA-IV isolates (189 of human and 5 of animal origin) from 12 countries, and 10 meticillin-susceptible precursors (from North-Eastern Romania; all of human origin) of the clone. Phylogenetic analysis was performed using a maximum-likelihood approach, a time-measured phylogeny was reconstructed using Bayesian analysis, and microarray genotyping was performed to identify resistance, virulence-associated and SCC (staphylococcal cassette chromosome ) genes. Isolates were typically sequence type 1 (190/204) and type t127 (183/204). Bayesian analysis indicated that European CC1-MRSA-IV emerged in approximately 1995 before undergoing rapid expansion in the late 1990s and 2000s, while spreading throughout Europe and into the Middle East. Phylogenetic analysis revealed an unstructured meticillin-resistant (MRSA) population, lacking significant geographical or temporal clusters. The MRSA were genotypically multidrug-resistant, consistently encoded , and intermittently (34/194) encoded an undisrupted gene with concomitant absence of the lysogenic phage-encoded genes and . All MRSA also harboured a characteristic ~5350 nt insertion in SCC adjacent to . Detailed demographic data from Denmark showed that there, the clone is typically (25/35) found in the community, and often (10/35) among individuals with links to South-Eastern Europe. This study elucidated the evolution and epidemiology of European CC1-MRSA-IV, which emerged from a meticillin-susceptible lineage prevalent in North-Eastern Romania before disseminating rapidly throughout Europe.
本研究调查了社区获得性和多药耐药欧洲 CC1-MRSA-IV 克隆的进化和流行病学。从 12 个国家的 194 株欧洲 CC1-MRSA-IV 分离株(189 株来自人类,5 株来自动物)和该克隆的 10 株耐甲氧西林敏感的前体(来自罗马尼亚东北部;均来自人类)获得全基因组序列。使用最大似然法进行系统发育分析,使用贝叶斯分析重建时间测定的系统发育,并进行微阵列基因分型以鉴定耐药性、毒力相关和 SCC(葡萄球菌盒染色体)基因。分离株通常为序列型 1(190/204)和 t127 型(183/204)。贝叶斯分析表明,欧洲 CC1-MRSA-IV 于 1995 年左右出现,随后在 90 年代末和 2000 年代迅速扩张,同时传播到欧洲和中东地区。系统发育分析显示,耐甲氧西林的金黄色葡萄球菌(MRSA)种群结构不合理,没有明显的地理或时间聚类。MRSA 在基因型上表现出多药耐药性,始终编码,并且间歇性地(34/194)编码一个未中断的基因,同时缺乏溶原性噬菌体编码的基因和。所有 MRSA 还携带一个特征性的~5350 核苷酸插入物,位于 SCC 附近。来自丹麦的详细人口统计学数据显示,在那里,该克隆通常(25/35)在社区中发现,并且经常(10/35)在与东南欧有联系的个体中发现。本研究阐明了欧洲 CC1-MRSA-IV 的进化和流行病学,该克隆起源于罗马尼亚东北部流行的耐甲氧西林敏感株,然后迅速传播到整个欧洲。