Lin Wanli, Chen Ying, Wu Bomeng, Chen Ying, Li Zuwei
Department of thoracic surgery, Gaozhou people's hospital, Gaozhou, 525200, China.
Cell Death Discov. 2021 Jun 25;7(1):161. doi: 10.1038/s41420-021-00557-2.
Lung adenocarcinoma (LUAD) remains the most common deadly disease and has a poor prognosis. Pyroptosis could regulate tumour cell proliferation, invasion, and metastasis, thereby affecting the prognosis of cancer patients. However, the role of pyroptosis-related genes (PRGs) in LUAD remains unclear. In our study, comprehensive bioinformatics analysis was performed to construct a prognostic gene model and ceRNA network. The correlations between PRGs and tumour-immune infiltration, tumour mutation burden, and microsatellite instability were evaluated using Pearson's correlation analysis. A total of 23 PRGs were upregulated or downregulated in LUAD. The genetic mutation variation landscape of PRG in LUAD was also summarised. Functional enrichment analysis revealed that these 33 PRGs were mainly involved in pyroptosis, the NOD-like receptor signalling pathway, and the Toll-like receptor signalling pathway. Prognosis analysis indicated a poor survival rate in LUAD patients with low expression of NLRP7, NLRP1, NLRP2, and NOD1 and high CASP6 expression. A prognostic PRG model constructed using the above five prognostic genes could predict the overall survival of LUAD patients with medium-to-high accuracy. Significant correlation was observed between prognostic PRGs and immune-cell infiltration, tumour mutation burden, and microsatellite instability. A ceRNA network was constructed to identify a lncRNA KCNQ1OT1/miR-335-5p/NLRP1/NLRP7 regulatory axis in LUAD. In conclusion, we performed a comprehensive bioinformatics analysis and identified a prognostic PRG signature containing five genes (NLRP7, NLRP1, NLRP2, NOD1, and CASP6) for LUAD patients. Our results also identified a lncRNA KCNQ1OT1/miR-335-5p/NLRP1/NLRP7 regulatory axis, which may also play an important role in the progression of LUAD. Further study needs to be conducted to verify this result.
肺腺癌(LUAD)仍然是最常见的致命疾病,预后较差。细胞焦亡可调节肿瘤细胞的增殖、侵袭和转移,从而影响癌症患者的预后。然而,细胞焦亡相关基因(PRGs)在LUAD中的作用仍不清楚。在我们的研究中,进行了全面的生物信息学分析,以构建预后基因模型和竞争性内源性RNA(ceRNA)网络。使用Pearson相关分析评估PRGs与肿瘤免疫浸润、肿瘤突变负担和微卫星不稳定性之间的相关性。共有23个PRGs在LUAD中上调或下调。还总结了LUAD中PRG的基因突变变异图谱。功能富集分析表明,这33个PRGs主要参与细胞焦亡、NOD样受体信号通路和Toll样受体信号通路。预后分析表明,NLRP7、NLRP1、NLRP2和NOD1低表达且CASP6高表达的LUAD患者生存率较低。使用上述五个预后基因构建的预后PRG模型可以以中到高的准确率预测LUAD患者的总生存期。观察到预后PRGs与免疫细胞浸润、肿瘤突变负担和微卫星不稳定性之间存在显著相关性。构建了一个ceRNA网络,以识别LUAD中的lncRNA KCNQ1OT1/miR-335-5p/NLRP1/NLRP7调控轴。总之,我们进行了全面的生物信息学分析,并为LUAD患者鉴定了一个包含五个基因(NLRP7、NLRP1、NLRP2、NOD1和CASP6)的预后PRG特征。我们的结果还鉴定了一个lncRNA KCNQ1OT1/miR-335-5p/NLRP1/NLRP7调控轴,其可能在LUAD的进展中也起重要作用。需要进一步研究来验证这一结果。