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大分子拥挤调节α-突触核蛋白淀粉样纤维的生长。

Macromolecular crowding modulates α-synuclein amyloid fiber growth.

机构信息

Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.

Department of Biology and Biological Engineering, Chalmers University of Technology, Gothenburg, Sweden.

出版信息

Biophys J. 2021 Aug 17;120(16):3374-3381. doi: 10.1016/j.bpj.2021.06.032. Epub 2021 Jul 7.

Abstract

The crowdedness of living cells, hundreds of milligrams per milliliter of macromolecules, may affect protein folding, function, and misfolding. Still, such processes are most often studied in dilute solutions in vitro. To assess consequences of the in vivo milieu, we here investigated the effects of macromolecular crowding on the amyloid fiber formation reaction of α-synuclein, the amyloidogenic protein in Parkinson's disease. For this, we performed spectroscopic experiments probing individual steps of the reaction as a function of the macromolecular crowding agent Ficoll70, which is an inert sucrose-based polymer that provides excluded-volume effects. The experiments were performed at neutral pH at quiescent conditions to avoid artifacts due to shaking and glass beads (typical conditions for α-synuclein), using amyloid fiber seeds to initiate reactions. We find that both primary nucleation and fiber elongation steps during α-synuclein amyloid formation are accelerated by the presence of 140 and 280 mg/mL Ficoll70. Moreover, in the presence of Ficoll70 at neutral pH, secondary nucleation appears favored, resulting in faster overall α-synuclein amyloid formation. In contrast, sucrose, a small-molecule osmolyte and building block of Ficoll70, slowed down α-synuclein amyloid formation. The ability of cell environments to modulate reaction kinetics to a large extent, such as severalfold faster individual steps in α-synuclein amyloid formation, is an important consideration for biochemical reactions in living systems.

摘要

细胞内环境的拥挤程度,每毫升数百毫克的生物大分子,可能会影响蛋白质的折叠、功能和错误折叠。然而,这些过程通常在体外的稀溶液中进行研究。为了评估体内环境的后果,我们在这里研究了大分子拥挤对帕金森病中淀粉样蛋白形成反应的α-突触核蛋白的影响。为此,我们进行了光谱实验,根据大分子拥挤剂 Ficoll70 探测反应的各个步骤,Ficoll70 是一种惰性的蔗糖基聚合物,提供排斥体积效应。实验在中性 pH 值下在静止条件下进行,以避免由于摇晃和玻璃珠(α-突触核蛋白的典型条件)引起的假象,使用淀粉样纤维种子引发反应。我们发现,在存在 140 和 280mg/mL Ficoll70 的情况下,α-突触核蛋白淀粉样形成的初级成核和纤维延伸步骤都得到了加速。此外,在中性 pH 值下存在 Ficoll70 时,次级成核似乎更有利,导致整体α-突触核蛋白淀粉样形成更快。相比之下,小分子渗透剂蔗糖和 Ficoll70 的结构单元则减缓了α-突触核蛋白淀粉样形成。细胞环境在很大程度上能够调节反应动力学,例如α-突触核蛋白淀粉样形成的各个步骤的速度提高几倍,这是生物系统中生化反应的一个重要考虑因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54cc/8391083/80affa17cbb3/gr1.jpg

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