Pot Matthieu, Reynaud Yann, Couvin David, Ducat Célia, Ferdinand Séverine, Gravey François, Gruel Gaëlle, Guérin François, Malpote Edith, Breurec Sébastien, Talarmin Antoine, Guyomard-Rabenirina Stéphanie
Transmission, Reservoir and Diversity of Pathogens Unit, Pasteur Institute of Guadeloupe, Les Abymes, France.
GRAM 2.0, Normandie University, UNICAEN, UNIROUEN, Caen, France.
Front Microbiol. 2021 Jun 25;12:628058. doi: 10.3389/fmicb.2021.628058. eCollection 2021.
Species belonging to complex have been isolated in numerous environments and samples of various origins. They are also involved in opportunistic infections in plants, animals, and humans. Previous prospection in Guadeloupe (French West Indies) indicated a high frequency of complex strains resistant to third-generation cephalosporins (3GCs) in a local lizard population (), but knowledge of the distribution and resistance of these strains in humans and the environment is limited. The aim of this study was to compare the distribution and antibiotic susceptibility pattern of complex members from different sources in a "one health" approach and to find possible explanations for the high level of resistance in non-human samples. complex strains were collected between January 2017 and the end of 2018 from anoles, farm animals, local fresh produce, water, and clinical human samples. Isolates were characterized by the heat-shock protein 60 gene-fragment typing method, and whole-genome sequencing was conducted on the most frequent clusters (i.e., C-VI and C-VIII). The prevalence of resistance to 3GCs was relatively high (56/346, 16.2%) in non-human samples. The associated resistance mechanism was related to an AmpC overproduction; however, in human samples, most of the resistant strains (40/62) produced an extended-spectrum beta-lactamase. No relation was found between resistance in isolates from wild anoles (35/168) and human activities. Specific core-genome phylogenetic analysis highlighted an important diversity in this bacterial population and no wide circulation among the different compartments. In our setting, the mutations responsible for resistance to 3GCs, especially in , were diverse and not compartment specific. In conclusion, high levels of resistance in non-human complex isolates are probably due to environmental factors that favor the selection of these resistant strains, and this will be explored further.
属于该菌群的物种已在众多环境和各种来源的样本中被分离出来。它们还与植物、动物和人类的机会性感染有关。此前在瓜德罗普岛(法属西印度群岛)进行的勘探表明,当地蜥蜴种群中对第三代头孢菌素(3GCs)耐药的该菌群菌株频率很高(),但这些菌株在人类和环境中的分布及耐药情况的了解有限。本研究的目的是以“同一健康”方法比较不同来源的该菌群成员的分布和抗生素敏感性模式,并找出非人类样本中高耐药水平的可能原因。2017年1月至2018年底从安乐蜥、农场动物、当地新鲜农产品、水和临床人类样本中收集了该菌群菌株。通过热休克蛋白60基因片段分型方法对分离株进行鉴定,并对最常见的聚类(即C-VI和C-VIII)进行全基因组测序。非人类样本中对3GCs的耐药率相对较高(56/346,16.2%)。相关的耐药机制与AmpC过度产生有关;然而,在人类样本中,大多数耐药菌株(40/62)产生超广谱β-内酰胺酶。未发现野生安乐蜥分离株(35/168)的耐药性与人类活动之间存在关联。特定的核心基因组系统发育分析突出了该细菌种群的重要多样性,且在不同区室之间没有广泛传播。在我们的研究环境中,导致对3GCs耐药的突变,尤其是在……中的突变,是多样的且不具有区室特异性。总之,非人类该菌群分离株中的高耐药水平可能是由于有利于这些耐药菌株选择的环境因素,这将进一步探讨。