• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

, 东方毒葛的全基因组序列。

The complete genome sequence of , Eastern Poison Ivy.

机构信息

Biodiversity, IRIDIAN GENOMES, Bethesda, MD, 20817, USA.

出版信息

F1000Res. 2020 Aug 20;9:1015. doi: 10.12688/f1000research.25556.1. eCollection 2020.

DOI:10.12688/f1000research.25556.1
PMID:34249347
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8226398/
Abstract

Eastern Poison Ivy ( , Anacardiaceae) is well known in Eastern North America for causing contact dermatitis, an itchy and painful rash in most people who come in contact with it.  We present the whole genome sequence and annotation of this species. A total of 96,255,779 paired-ends reads consisting of 28.9 G bases were obtained by sequencing one leaf from a wild-collected plant.  The reads were assembled by a method followed by alignment to related species. Annotation was performed via GenMark-ES. The raw and assembled data is publicly available via GenBank: Sequence Read Archive ( SRR10325927) and Assembly ( GCA_009867345).

摘要

东部毒葛(Toxicodendron radicans,漆树科)在北美东部因其引起接触性皮炎而广为人知,大多数接触它的人都会出现瘙痒和疼痛的皮疹。我们呈现了该物种的全基因组序列和注释。通过对一株野生植物的一片叶子进行测序,共获得了 96255779 对 28.9G 碱基的末端读长。使用 方法对读长进行组装,然后与相关物种进行比对。通过 GenMark-ES 进行注释。原始和组装的数据可通过 GenBank 的序列读取档案 (SRR10325927) 和组装 (GCA_009867345) 公开获取。

相似文献

1
The complete genome sequence of , Eastern Poison Ivy., 东方毒葛的全基因组序列。
F1000Res. 2020 Aug 20;9:1015. doi: 10.12688/f1000research.25556.1. eCollection 2020.
2
Characterization of 42 microsatellite markers from poison ivy, Toxicodendron radicans (Anacardiaceae).从毒葛,毒漆树(漆树科)中鉴定出 42 个微卫星标记。
Int J Mol Sci. 2013 Oct 14;14(10):20414-26. doi: 10.3390/ijms141020414.
3
Toxicodendron Toxicity漆树毒性
4
Sequencing and De Novo Assembly of the Toxicodendron radicans (Poison Ivy) Transcriptome.毒漆藤转录组的测序与从头组装
Genes (Basel). 2017 Nov 10;8(11):317. doi: 10.3390/genes8110317.
5
The complete genome sequence of , the Sweetleaf.甜叶菊的全基因组序列。
F1000Res. 2020 Jul 21;9:751. doi: 10.12688/f1000research.24396.1. eCollection 2020.
6
Herbarium specimens reveal century-long trait shifts in poison ivy due to anthropogenic CO emissions.标本馆标本显示,由于人为 CO 排放,毒葛的特征在长达一个世纪的时间里发生了变化。
Am J Bot. 2023 Sep;110(9):e16225. doi: 10.1002/ajb2.16225. Epub 2023 Sep 11.
7
Recognizing the Toxicodendrons (poison ivy, poison oak, and poison sumac).识别毒漆藤属植物(毒葛、毒橡树和毒漆树)。
J Am Acad Dermatol. 1981 Jan;4(1):99-114. doi: 10.1016/s0190-9622(81)70014-8.
8
Whole-Genome Sequence and Classification of 11 Endophytic Bacteria from Poison Ivy (Toxicodendron radicans).来自毒葛(毛果漆树)的11种内生细菌的全基因组序列与分类
Genome Announc. 2015 Nov 19;3(6):e01319-15. doi: 10.1128/genomeA.01319-15.
9
Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2.毒葛(毛果漆树)对大气二氧化碳浓度升高的生物量及毒性响应
Proc Natl Acad Sci U S A. 2006 Jun 13;103(24):9086-9. doi: 10.1073/pnas.0602392103. Epub 2006 Jun 5.
10
The effectiveness of jewelweed, Impatiens capensis, the related cultivar I. balsamina and the component, lawsone in preventing post poison ivy exposure contact dermatitis.接骨草、凤仙花(即指甲花)及其成分指甲花醌预防毒葛暴露后接触性皮炎的效果。
J Ethnopharmacol. 2012 Aug 30;143(1):314-8. doi: 10.1016/j.jep.2012.06.038. Epub 2012 Jul 3.

本文引用的文献

1
Mango Dermatitis After Urushiol Sensitization.漆酚致敏后发生芒果皮炎。
Clin Pract Cases Emerg Med. 2019 Sep 30;3(4):361-363. doi: 10.5811/cpcem.2019.6.43196. eCollection 2019 Nov.
2
Severe contact dermatitis caused by urushiol in Japanese lacquer.
Contact Dermatitis. 2019 Jan;80(1):55-56. doi: 10.1111/cod.13104. Epub 2018 Sep 3.
3
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic:一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
4
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
5
Recent advances in research on lacquer allergy.漆树过敏研究的新进展。
Allergol Int. 2012 Mar;61(1):45-50. doi: 10.2332/allergolint.11-RA-0324. Epub 2011 Oct 25.
6
Gene identification in novel eukaryotic genomes by self-training algorithm.基于自训练算法的新型真核生物基因组基因识别
Nucleic Acids Res. 2005 Nov 28;33(20):6494-506. doi: 10.1093/nar/gki937. Print 2005.
7
Individual variations in allergic contact dermatitis from urushiol.漆酚引起的过敏性接触性皮炎中的个体差异。
Arch Dermatol. 1999 Aug;135(8):1002-3. doi: 10.1001/archderm.135.8.1002.
8
Enrichment and function of urushiol (poison ivy)-specific T lymphocytes in lesions of allergic contact dermatitis to urushiol.漆酚(毒藤)特异性T淋巴细胞在漆酚过敏性接触性皮炎皮损中的富集及功能
J Immunol. 1990 Dec 1;145(11):3706-13.