从水稻根际分离出的氨氧化细菌NRS527菌株的全基因组序列
Complete Genome Sequence of the Ammonia-Oxidizing Bacterium sp. Strain NRS527, Isolated from the Rhizoplane of Paddy Rice.
作者信息
Nakagawa Tatsunori, Tsuchiya Yuki, Takahashi Reiji
机构信息
Department of Chemistry and Life Science, College of Bioresource Sciences, Nihon University, Fujisawa, Kanagawa, Japan.
出版信息
Microbiol Resour Announc. 2021 Jul 15;10(28):e0042021. doi: 10.1128/MRA.00420-21.
Abstract
This work reports the complete genome sequence of the chemoautotrophic ammonia-oxidizing bacterium sp. strain NRS527. The assembled genome is composed of a circular chromosome and two plasmids (80,750 bp and 41,389 bp, respectively).
摘要
这项研究报告了化能自养氨氧化细菌菌株NRS527的完整基因组序列。组装后的基因组由一条环状染色体和两个质粒组成（分别为80,750 bp和41,389 bp）。
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本文引用的文献
1
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
2
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
3
Bandage: interactive visualization of de novo genome assemblies.绷带：从头基因组组装的交互式可视化
Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.
4
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
5
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
6
16S rRNA and amoA-based phylogeny of 12 novel betaproteobacterial ammonia-oxidizing isolates: extension of the dataset and proposal of a new lineage within the nitrosomonads.基于16S rRNA和amoA基因的12株新型β-变形菌纲氨氧化菌的系统发育分析：数据集扩展及亚硝化单胞菌属内新谱系的提议
Int J Syst Evol Microbiol. 2003 Sep;53(Pt 5):1485-1494. doi: 10.1099/ijs.0.02638-0.
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