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Draft Genome Assembly and Transcriptome Dataset for European Turnip ( L. ssp. ), ECD4 Carrying Clubroot Resistance.

作者信息

Park Sin-Gi, Noh Eonji, Choi SuRyun, Choi Boram, Shin In-Gang, Yoo Seung-Il, Lee Dong Jin, Ji Sumin, Kim Hae-Suk, Hwang Yoon-Jung, Kim Jung Sun, Batley Jacqueline, Lim Yong Pyo, Edwards David, Hong Chang Pyo

机构信息

Theragen Bio Co., Ltd., Suwon, South Korea.

Department of Horticulture, College of Agriculture and Life Science, Chungnam National University, Daejeon, South Korea.

出版信息

Front Genet. 2021 Jul 2;12:651298. doi: 10.3389/fgene.2021.651298. eCollection 2021.

DOI:10.3389/fgene.2021.651298
PMID:34276765
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8285094/
Abstract
摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3486/8285094/bdd9040fc2ce/fgene-12-651298-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3486/8285094/bdd9040fc2ce/fgene-12-651298-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3486/8285094/bdd9040fc2ce/fgene-12-651298-g0001.jpg

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A chromosome-level reference genome of non-heading Chinese cabbage [Brassica campestris (syn. Brassica rapa) ssp. chinensis].不结球白菜[白菜（同义词：芜菁）亚种小白菜]的染色体水平参考基因组。
Hortic Res. 2020 Dec 28;7(1):212. doi: 10.1038/s41438-020-00449-z.
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Assembly of the non-heading pak choi genome and comparison with the genomes of heading Chinese cabbage and the oilseed yellow sarson.组装不结球白菜基因组并与结球白菜和油菜薹基因组进行比较。
Plant Biotechnol J. 2021 May;19(5):966-976. doi: 10.1111/pbi.13522. Epub 2021 Jan 3.
3
Clubroot resistance gene Rcr6 in Brassica nigra resides in a genomic region homologous to chromosome A08 in B. rapa.
从“组学”方法了解根肿病中我们能学到什么？
Int J Mol Sci. 2022 Jun 4;23(11):6293. doi: 10.3390/ijms23116293.
甘蓝黑腐病抗性基因 Rcr6 在黑芥中位于与白菜 A08 染色体同源的基因组区域。
BMC Plant Biol. 2019 May 29;19(1):224. doi: 10.1186/s12870-019-1844-5.
4
BUSCO: Assessing Genome Assembly and Annotation Completeness.BUSCO：评估基因组组装和注释的完整性
Methods Mol Biol. 2019;1962:227-245. doi: 10.1007/978-1-4939-9173-0_14.
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Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.清除单倍型：三代二倍体基因组组装的等位基因 contig 重新分配。
BMC Bioinformatics. 2018 Nov 29;19(1):460. doi: 10.1186/s12859-018-2485-7.
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Nat Plants. 2018 Nov;4(11):879-887. doi: 10.1038/s41477-018-0289-4. Epub 2018 Nov 2.
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