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通过在级联反应中构建酶微环境提高活性:分子层面的理解

Boosted activity by engineering the enzyme microenvironment in cascade reaction: A molecular understanding.

作者信息

Wang Jing, Zhang Haiyang, Yin Deping, Xu Xiao, Tan Tianwei, Lv Yongqin

机构信息

Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.

Department of Biological Science and Engineering, School of Chemistry and Biological Engineering, University of Science and Technology Beijing, Beijing, 100083, China.

出版信息

Synth Syst Biotechnol. 2021 Jul 6;6(3):163-172. doi: 10.1016/j.synbio.2021.06.004. eCollection 2021 Sep.

Abstract

Engineering of enzyme microenvironment can surprisingly boost the apparent activity. However, the underlying regulation mechanism is not well-studied at a molecular level so far. Here, we present a modulation of two model enzymes of cytochrome (Cty C) and -amino acid oxidase (DAAO) with opposite pH-activity profiles using ionic polymers. The operational pH of poly (acrylic acid) modified Cyt C and polyallylamine modified DAAO was extended to 3-7 and 2-10 where the enzyme activity was larger than that at their optimum pH of 4.5 and 8.5 by 106% and 28%, respectively. The cascade reaction catalyzed by two modified enzymes reveals a 1.37-fold enhancement in catalytic efficiency compared with their native counterparts. The enzyme activity boosting is understood by performing the UV-vis/CD spectroscopy and molecular dynamics simulations in the atomistic level. The increased activity is ascribed to the favorable microenvironment in support of preserving enzyme native structures nearby cofactor under external perturbations.

摘要

酶微环境的工程改造能够惊人地提高表观活性。然而,迄今为止,其潜在的调控机制在分子水平上尚未得到充分研究。在此,我们展示了使用离子聚合物对细胞色素C(Cty C)和D-氨基酸氧化酶(DAAO)这两种具有相反pH活性曲线的模型酶进行的调控。聚(丙烯酸)修饰的Cyt C和聚烯丙胺修饰的DAAO的操作pH范围扩展至3-7和2-10,在此pH范围内,酶活性分别比其最佳pH值4.5和8.5时高出106%和28%。两种修饰酶催化的级联反应显示,与天然酶相比,催化效率提高了1.37倍。通过在原子水平上进行紫外可见/圆二色光谱和分子动力学模拟,理解了酶活性的提高。活性增加归因于在外部扰动下,有利于维持辅因子附近酶天然结构的微环境。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f8c3/8271104/0f82b08f7d9d/sc1.jpg

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