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来自细菌的15种异源生物代谢 - 乙酰转移酶(NAT)同源物的比较研究

Comparative Investigation of 15 Xenobiotic-Metabolizing -Acetyltransferase (NAT) Homologs from Bacteria.

作者信息

Garefalaki Vasiliki, Papavergi Maria-Giusy, Savvidou Olga, Papanikolaou Georgia, Felföldi Tamás, Márialigeti Károly, Fakis Giannoulis, Boukouvala Sotiria

机构信息

Department of Molecular Biology and Genetics, Democritus University of Thrace, Alexandroupolis, Greece.

Department of Microbiology, ELTE Eötvös Loránd University, Budapest, Hungary.

出版信息

Appl Environ Microbiol. 2021 Sep 10;87(19):e0081921. doi: 10.1128/AEM.00819-21.

Abstract

Arylamines constitute a large group of industrial chemicals detoxified by certain bacteria through conjugation reactions catalyzed by -acetyltransferase (NAT) enzymes. NAT homologs, mostly from pathogenic bacteria, have been the subject of individual studies that do not lend themselves to direct comparisons. By implementing a practicable pipeline, we carried out a comparative investigation of 15 NAT homologs from 10 bacteria, mainly bacilli, streptomycetes, and one alphaproteobacterium. The new homologs were characterized for their sequence, phylogeny, predicted structural features, substrate specificity, thermal stability, and interaction with components of the enzymatic reaction. NATs demonstrated the characteristics of xenobiotic metabolizing -acetyltransferases, with the majority of homologs generating high activities. Nonpathogenic bacilli are thus proposed as suitable mediators of arylamine bioremediation. Of the homologs, the NAT2 isoenzyme of efficiently transformed highly toxic arylamines, while the remaining homologs were inactive or generated low activities, suggesting that xenobiotic metabolism may not be their primary role. The functional divergence of NATs was consistent with their observed sequence, phylogenetic, and structural variability. These and previous findings support classification of microbial NATs into three groups. The first includes xenobiotic metabolizing enzymes with dual acetyl/propionyl coenzyme A (CoA) selectivity. Homologs of the second group are more rarely encountered, acting as malonyltransferases mediating specialized ecological interactions. Homologs of the third group effectively lack acyltransferase activity, and their study may represent an interesting research area. Comparative NAT enzyme screens from a broad microbial spectrum may guide rational selection of homologs likely to share similar biological functions, allowing their combined investigation and use in biotechnological applications. Arylamines are encountered as industrial chemicals or by-products of agrochemicals that may constitute highly toxic contaminants of soils and groundwaters. Although such chemicals may be recalcitrant to biotransformation, they can be enzymatically converted into less toxic forms by some bacteria. Therefore, exploitation of the arylamine detoxification capabilities of microorganisms is investigated as an effective approach for bioremediation. Among microbial biotransformations of arylamines, enzymatic conjugation reactions have been reported, including NAT-mediated acetylation. Comparative investigations of NAT enzymes across a range of microorganisms can be laborious and expensive, so here we present a streamlined methodology for implementing such work. We compared 15 NAT homologs from nonpathogenic, free-living bacteria of potential biotechnological utility, mainly , which are known for their rich secondary and xenobiotic metabolism. The analysis allowed insights into the evolutionary and functional divergence of bacterial NAT homologs, combined with assessment of their fundamental structural and enzymatic differences and similarities.

摘要

芳胺是一大类工业化学品,某些细菌通过由N - 乙酰基转移酶(NAT)催化的结合反应对其进行解毒。NAT同源物大多来自致病细菌,此前已针对这些同源物进行过个别研究,但这些研究并不便于进行直接比较。通过实施一个可行的流程,我们对来自10种细菌(主要是芽孢杆菌、链霉菌和一种α-变形菌)的15种NAT同源物进行了比较研究。对这些新的同源物的序列、系统发育、预测的结构特征、底物特异性、热稳定性以及与酶促反应组分的相互作用进行了表征。NAT展现出了外源性物质代谢N - 乙酰基转移酶的特征,大多数同源物具有高活性。因此,非致病芽孢杆菌被认为是芳胺生物修复的合适介质。在这些同源物中,某菌的NAT2同工酶能高效转化剧毒芳胺,而其余同源物则无活性或活性较低,这表明外源性物质代谢可能不是它们的主要功能。NAT的功能差异与其序列、系统发育和结构变异性相符。这些发现以及之前的研究结果支持将微生物NAT分为三组。第一组包括具有双乙酰/丙酰辅酶A(CoA)选择性的外源性物质代谢酶。第二组的同源物较少见,作为介导特殊生态相互作用的丙二酰转移酶发挥作用。第三组的同源物实际上缺乏酰基转移酶活性,对它们的研究可能是一个有趣的研究领域。从广泛的微生物谱中进行NAT酶的比较筛选,可能会指导合理选择可能具有相似生物学功能的同源物,从而便于对它们进行联合研究并应用于生物技术领域。芳胺作为工业化学品或农用化学品的副产物存在,可能构成土壤和地下水的剧毒污染物。尽管这类化学品可能难以进行生物转化,但一些细菌可以通过酶促反应将它们转化为毒性较低的形式。因此,研究微生物对芳胺的解毒能力被视为一种有效的生物修复方法。在芳胺的微生物生物转化过程中,已报道了酶促结合反应,包括NAT介导 的乙酰化反应。对一系列微生物中的NAT酶进行比较研究可能既费力又昂贵,所以在此我们提出一种简化的方法来开展此类工作。我们比较了来自具有潜在生物技术应用价值的非致病、自由生活细菌的15种NAT同源物,主要是某菌,该菌以其丰富的次生代谢和外源性物质代谢而闻名。该分析有助于深入了解细菌NAT同源物的进化和功能差异,同时评估它们基本的结构和酶学差异及相似性。

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The actinobacterium Tsukamurella paurometabola has a functionally divergent arylamine N-acetyltransferase (NAT) homolog.
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