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从高毒力肺炎克雷伯菌中动员非结合毒力质粒。

Mobilization of the nonconjugative virulence plasmid from hypervirulent Klebsiella pneumoniae.

机构信息

Department of Pulmonary and Critical Care Medicine, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China; Institute of Respiratory Diseases, Shanghai Jiao Tong University School of Medicine, Shanghai 200025, China; Shanghai Key Laboratory of Emergency Prevention, Diagnosis and Treatment of Respiratory Infectious Diseases, Shanghai, 200025, China.

State Key Laboratory of Microbial Metabolism, Joint International Laboratory on Metabolic & Developmental Sciences, School of Life Sciences & Biotechnology, Shanghai Jiao Tong University, Shanghai, 200030, China.

出版信息

Genome Med. 2021 Jul 22;13(1):119. doi: 10.1186/s13073-021-00936-5.

Abstract

BACKGROUND

Klebsiella pneumoniae, as a global priority pathogen, is well known for its capability of acquiring mobile genetic elements that carry resistance and/or virulence genes. Its virulence plasmid, previously deemed nonconjugative and restricted within hypervirulent K. pneumoniae (hvKP), has disseminated into classic K. pneumoniae (cKP), particularly carbapenem-resistant K. pneumoniae (CRKP), which poses alarming challenges to public health. However, the mechanism underlying its transfer from hvKP to CRKP is unclear.

METHODS

A total of 28 sequence type (ST) 11 bloodstream infection-causing CRKP strains were collected from Ruijin Hospital in Shanghai, China, and used as recipients in conjugation assays. Transconjugants obtained from conjugation assays were confirmed by XbaI and S1 nuclease pulsed-field gel electrophoresis, PCR detection and/or whole-genome sequencing. The plasmid stability of the transconjugants was evaluated by serial culture. Genetically modified strains and constructed mimic virulence plasmids were employed to investigate the mechanisms underlying mobilization. The level of extracellular polysaccharides was measured by mucoviscosity assays and uronic acid quantification. An in silico analysis of 2608 plasmids derived from 814 completely sequenced K. pneumoniae strains available in GenBank was performed to investigate the distribution of putative helper plasmids and mobilizable virulence plasmids.

RESULTS

A nonconjugative virulence plasmid was mobilized by the conjugative plasmid belonging to incompatibility group F (IncF) from the hvKP strain into ST11 CRKP strains under low extracellular polysaccharide-producing conditions or by employing intermediate E. coli strains. The virulence plasmid was mobilized via four modes: transfer alone, cotransfer with the conjugative IncF plasmid, hybrid plasmid formation due to two rounds of single-strand exchanges at specific 28-bp fusion sites or homologous recombination. According to the in silico analysis, 31.8% (242) of the putative helper plasmids and 98.8% (84/85) of the virulence plasmids carry the 28-bp fusion site. All virulence plasmids carry the origin of the transfer site.

CONCLUSIONS

The nonconjugative virulence plasmid in ST11 CRKP strains is putatively mobilized from hvKP or E. coli intermediates with the help of conjugative IncF plasmids. Our findings emphasize the importance of raising public awareness of the rapid dissemination of virulence plasmids and the consistent emergence of hypervirulent carbapenem-resistant K. pneumoniae (hv-CRKP) strains.

摘要

背景

肺炎克雷伯菌是一种全球优先病原体,其能够获取携带耐药和/或毒力基因的可移动遗传元件是众所周知的。它的毒力质粒以前被认为是非接合的,并局限于高毒力肺炎克雷伯菌(hvKP)中,但现已传播到经典肺炎克雷伯菌(cKP),特别是碳青霉烯类耐药肺炎克雷伯菌(CRKP),这对公共卫生构成了严重挑战。然而,其从 hvKP 转移到 CRKP 的机制尚不清楚。

方法

本研究共收集了来自中国上海瑞金医院的 28 株血流感染致 CRKP 菌株(ST11),并将其用作接合试验中的受体。通过 XbaI 和 S1 核酸酶脉冲场凝胶电泳、PCR 检测和/或全基因组测序确认接合试验获得的转导子。通过连续培养评估转导子的质粒稳定性。利用基因修饰菌株和构建的模拟毒力质粒来研究其移动的机制。通过粘滞性测定和糖醛酸定量来测量细胞外多糖的水平。对来自 GenBank 中 814 株完全测序的肺炎克雷伯菌菌株的 2608 个质粒进行了计算机分析,以研究潜在辅助质粒和可移动毒力质粒的分布。

结果

在低细胞外多糖产生条件下,或通过使用中间型大肠杆菌菌株,来自 hvKP 菌株的接合型 F 组(IncF)质粒可将非接合性毒力质粒转移到 ST11 CRKP 菌株中。毒力质粒通过四种模式进行转移:单独转移、与接合型 IncF 质粒共转移、由于在特定 28 个碱基对融合位点处发生两轮单链交换而形成杂种质粒,或同源重组。根据计算机分析,31.8%(242)的潜在辅助质粒和 98.8%(84/85)的毒力质粒携带 28 个碱基对融合位点。所有毒力质粒均携带转移起始位点。

结论

ST11 CRKP 菌株中的非接合性毒力质粒可能在接合型 IncF 质粒的帮助下从 hvKP 或大肠杆菌中间体中转移。我们的研究结果强调了提高公众对毒力质粒快速传播和高毒力碳青霉烯类耐药肺炎克雷伯菌(hv-CRKP)菌株不断出现的认识的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe88/8299605/5ce50294b7f2/13073_2021_936_Fig1_HTML.jpg

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