• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

亚原子分辨率下化学键合的影响:以α-硼为例的研究

The Effects of Chemical Bonding at Subatomic Resolution: A Case Study on α-Boron.

作者信息

Fischer Andreas, Eickerling Georg, Scherer Wolfgang

机构信息

Institut für Physik, Universität Augsburg, Universitätsstraße 1, D-86159 Augsburg, Germany.

出版信息

Molecules. 2021 Jul 14;26(14):4270. doi: 10.3390/molecules26144270.

DOI:10.3390/molecules26144270
PMID:34299544
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8303496/
Abstract

Similar to classical , aspherical deformations of the electron density in the atomic core region can result in in refinements using a Hansen-Coppens multipolar model (HCM), especially when highly precise experimental datasets with resolutions far beyond sin(θ)/λ ≤ 1.0 Å are employed. These shifts are about two orders of magnitude smaller than their counterparts caused by valence shell deformations, and their underlying deformations are mainly of dipolar character for 1st row atoms. Here, we analyze the resolution dependence of core asphericity shifts in α-boron. Based on theoretical structure factors, an appropriate Extended HCM (EHCM) is developed, which is tested against experimental high-resolution (sin()/ ≤ 1.6 Å) single-crystal diffraction data. Bond length deviations due to core asphericity shifts of α-boron in the order of 4-6·10 Å are small but significant at this resolution and can be effectively compensated by an EHCM, although the correlation of the additional model parameters with positional parameters prevented a free refinement of all core model parameters. For high quality, high resolution data, a proper treatment with an EHCM or other equivalent methods is therefore highly recommended.

摘要

与经典情况类似,原子核区域电子密度的非球形变形会导致在使用汉森 - 科彭斯多极模型(HCM)进行精修时出现[相关问题],特别是当使用分辨率远超过sin(θ)/λ ≤ 1.0 Å的高精度实验数据集时。这些位移比价壳层变形引起的位移小约两个数量级,并且对于第一行原子,其潜在变形主要具有偶极特征。在此,我们分析了α - 硼中核心非球形位移的分辨率依赖性。基于理论结构因子,开发了一种合适的扩展HCM(EHCM),并针对实验高分辨率(sin(θ)/λ ≤ 1.6 Å)单晶衍射数据进行了测试。α - 硼由于核心非球形位移导致的键长偏差约为4 - 6·10 Å,在该分辨率下虽小但很显著,并且可以通过EHCM有效补偿,尽管额外模型参数与位置参数的相关性阻止了所有核心模型参数的自由精修。因此,对于高质量、高分辨率数据,强烈建议使用EHCM或其他等效方法进行适当处理。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/fd4823bf6ca6/molecules-26-04270-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/8b8803799703/molecules-26-04270-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/47f1bea63955/molecules-26-04270-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/7ce03bae1946/molecules-26-04270-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/8c0ab1be9028/molecules-26-04270-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/5896da12424e/molecules-26-04270-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/d043788a4847/molecules-26-04270-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/fd4823bf6ca6/molecules-26-04270-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/8b8803799703/molecules-26-04270-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/47f1bea63955/molecules-26-04270-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/7ce03bae1946/molecules-26-04270-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/8c0ab1be9028/molecules-26-04270-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/5896da12424e/molecules-26-04270-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/d043788a4847/molecules-26-04270-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36f9/8303496/fd4823bf6ca6/molecules-26-04270-g007.jpg

相似文献

1
The Effects of Chemical Bonding at Subatomic Resolution: A Case Study on α-Boron.亚原子分辨率下化学键合的影响:以α-硼为例的研究
Molecules. 2021 Jul 14;26(14):4270. doi: 10.3390/molecules26144270.
2
Experimental and theoretical charge density studies at subatomic resolution.亚原子分辨率下的实验和理论电荷密度研究。
J Phys Chem A. 2011 Nov 17;115(45):13061-71. doi: 10.1021/jp2050405. Epub 2011 Aug 24.
3
On the application of an experimental multipolar pseudo-atom library for accurate refinement of small-molecule and protein crystal structures.关于一种用于精确优化小分子和蛋白质晶体结构的实验性多极伪原子库的应用。
Acta Crystallogr A. 2007 Mar;63(Pt 2):108-25. doi: 10.1107/S0108767306053748. Epub 2007 Feb 15.
4
Tightly binding valence electron in aluminum observed through X-ray charge density study.通过X射线电荷密度研究观察到铝中紧密结合的价电子。
Sci Rep. 2018 Aug 10;8(1):11964. doi: 10.1038/s41598-018-30470-1.
5
Fourier-synthesis approach for static charge-density reconstruction from theoretical structure factors of CaB.傅里叶合成法从 CaB 的理论结构因子重建静态电荷密度。
Acta Crystallogr A Found Adv. 2023 May 1;79(Pt 3):246-272. doi: 10.1107/S2053273323002644. Epub 2023 May 5.
6
Refinement of organic crystal structures with multipolar electron scattering factors.利用多极电子散射因子对有机晶体结构进行精修。
Acta Crystallogr A Found Adv. 2020 Jan 1;76(Pt 1):92-109. doi: 10.1107/S2053273319015304.
7
Experimental and theoretical charge density, intermolecular interactions and electrostatic properties of metronidazole.甲硝唑的实验与理论电荷密度、分子间相互作用及静电性质
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2019 Dec 1;75(Pt 6):942-953. doi: 10.1107/S2052520619011272. Epub 2019 Oct 26.
8
Charge-density analysis of a protein structure at subatomic resolution: the human aldose reductase case.亚原子分辨率下蛋白质结构的电荷密度分析:以人醛糖还原酶为例
Acta Crystallogr D Biol Crystallogr. 2008 May;64(Pt 5):567-88. doi: 10.1107/S0907444908006082. Epub 2008 Apr 19.
9
The invariom model and its application: refinement of D,L-serine at different temperatures and resolution.不变性模型及其应用:不同温度和分辨率下D,L-丝氨酸的细化
Acta Crystallogr A. 2005 May;61(Pt 3):314-20. doi: 10.1107/S0108767305005039. Epub 2005 Apr 21.
10
The generalized invariom database (GID).广义不变量数据库(GID)
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2013 Apr;69(Pt 2):91-104. doi: 10.1107/S2052519213002285. Epub 2013 Mar 14.

引用本文的文献

1
On the flexibility of the multipole model refinement. A DFT benchmark study of the tetrakis(μ-acetato)diaquadicopper model system.关于多极模型精修的灵活性。四(μ-乙酸根)二水合铜模型体系的密度泛函理论基准研究。
IUCrJ. 2025 Jul 1;12(Pt 4):444-461. doi: 10.1107/S2052252525003355.
2
HTD2: a single-crystal X-ray diffractometer for combined high-pressure/low-temperature experiments at laboratory scale.HTD2:一种用于实验室规模的高压/低温联合实验的单晶X射线衍射仪。
J Appl Crystallogr. 2022 Sep 28;55(Pt 5):1255-1266. doi: 10.1107/S160057672200766X. eCollection 2022 Oct 1.

本文引用的文献

1
Accurate crystal structures and chemical properties from NoSpherA2.来自NoSpherA2的精确晶体结构和化学性质。
Chem Sci. 2020 Nov 9;12(5):1675-1692. doi: 10.1039/d0sc05526c.
2
Multipole electron densities and structural parameters from synchrotron powder X-ray diffraction data obtained with a MYTHEN detector system (OHGI).使用MYTHEN探测器系统(OHGI)获得的同步辐射粉末X射线衍射数据的多极电子密度和结构参数。
Acta Crystallogr A Found Adv. 2021 Mar 1;77(Pt 2):85-95. doi: 10.1107/S2053273320016605. Epub 2021 Jan 28.
3
Multipole electron densities and atomic displacement parameters in urea from accurate powder X-ray diffraction.
基于精确粉末X射线衍射的尿素中的多极电子密度和原子位移参数
Acta Crystallogr A Found Adv. 2019 Jul 1;75(Pt 4):600-609. doi: 10.1107/S205327331900799X. Epub 2019 Jun 26.
4
X-ray electron density investigation of chemical bonding in van der Waals materials.范德华材料中化学键合的X射线电子密度研究。
Nat Mater. 2018 Mar;17(3):249-252. doi: 10.1038/s41563-017-0012-2. Epub 2018 Feb 12.
5
Probing the accuracy and precision of Hirshfeld atom refinement with interfaced with .探究与……接口的 Hirshfeld 原子精修的准确性和精密度。 你提供的原文似乎不完整,“with interfaced with.”后面缺少具体内容。
IUCrJ. 2018 Jan 1;5(Pt 1):32-44. doi: 10.1107/S2052252517015548.
6
Validation of experimental charge-density refinement strategies: when do we overfit?实验电荷密度精修策略的验证:我们何时会出现过拟合?
IUCrJ. 2017 May 24;4(Pt 4):420-430. doi: 10.1107/S2052252517005103. eCollection 2017 Jul 1.
7
Accurate charge densities from powder X-ray diffraction - a new version of the Aarhus vacuum imaging-plate diffractometer.粉末X射线衍射法测定精确电荷密度——奥胡斯真空成像板衍射仪新版本
Acta Crystallogr B Struct Sci Cryst Eng Mater. 2017 Aug 1;73(Pt 4):521-530. doi: 10.1107/S2052520617006357. Epub 2017 Jul 27.
8
On the error in the nucleus-centered multipolar expansion of molecular electron density and its topology: A direct-space computational study.分子电子密度的核中心多极展开中的误差及其拓扑结构:直接空间计算研究。
J Chem Phys. 2017 May 28;146(20):204105. doi: 10.1063/1.4983633.
9
Synchrotron powder diffraction of silicon: high-quality structure factors and electron density.硅的同步辐射粉末衍射:高质量的结构因子和电子密度。
Acta Crystallogr A Found Adv. 2016 Jan;72(Pt 1):28-35. doi: 10.1107/S2053273315018318. Epub 2016 Jan 1.
10
Crystal structure refinement with SHELXL.使用SHELXL进行晶体结构精修。
Acta Crystallogr C Struct Chem. 2015 Jan;71(Pt 1):3-8. doi: 10.1107/S2053229614024218. Epub 2015 Jan 1.