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迁徙在复合种群传染病模型中的作用。

Commuting in metapopulation epidemic modeling.

机构信息

Soreq Nuclear Research Center, Yavne, 81800, Israel.

出版信息

Sci Rep. 2021 Jul 26;11(1):15198. doi: 10.1038/s41598-021-94672-w.

Abstract

The COVID-19 pandemic led authorities all over the world to imposing travel restrictions both on a national and on an international scale. Understanding the effect of such restrictions requires analysis of the role of commuting and calls for a metapopulation modeling that incorporates both local, intra-community infection and population exchange between different locations. Standard metapopulation models are formulated as markovian processes, and as such they do not label individuals according to their original location. However, commuting from home to work and backwards (reverse commuting) is the main pattern of transportation. Thus, it is important to be able to accurately model the effect of commuting on epidemic spreading. In this study we develop a methodology for modeling bidirectional commuting of individuals, without keeping track of each individual separately and with no need of proliferation of number of compartments beyond those defined by the epidemiologic model. We demonstrate the method using a city map of the state of Israel. The presented algorithm does not require any special computation resources and it may serve as a basis for intervention strategy examination in various levels of complication and resolution. We show how to incorporate an epidemiological model into a metapopulation commuting scheme while preserving the internal logic of the epidemiological modeling. The method is general and independent on the details of the epidemiological model under consideration.

摘要

COVID-19 大流行促使世界各地的当局在国家和国际范围内实施旅行限制。了解这些限制的影响需要分析通勤的作用,并呼吁采用元种群模型,将本地、社区内感染和不同地点之间的人口交换都纳入其中。标准的元种群模型被表述为马尔可夫过程,因此它们不会根据个体的原始位置对其进行标记。然而,从家到工作地点再往返(反向通勤)是主要的交通模式。因此,能够准确地模拟通勤对传染病传播的影响非常重要。在本研究中,我们开发了一种用于模拟个体双向通勤的方法,无需单独跟踪每个个体,也无需超出流行病学模型定义的范围来增加隔室的数量。我们使用以色列州的城市地图来演示该方法。所提出的算法不需要任何特殊的计算资源,它可以作为各种复杂程度和分辨率的干预策略检查的基础。我们展示了如何在保留流行病学建模内部逻辑的同时,将流行病学模型纳入元种群通勤方案中。该方法是通用的,不依赖于所考虑的流行病学模型的细节。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/88bd/8313540/f030b675d4da/41598_2021_94672_Fig1_HTML.jpg

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