Kidney Disease Center, The First Affiliated Hospital, College of Medicine, Zhejiang University, Hangzhou, China.
Key Laboratory of Nephropathy, Hangzhou, China.
Front Immunol. 2021 Jul 13;12:659193. doi: 10.3389/fimmu.2021.659193. eCollection 2021.
Sepsis is a heterogeneous syndrome induced by infection and results in high mortality. Even though more than 100 biomarkers for sepsis prognosis were evaluated, prediction of patient outcomes in sepsis continues to be driven by clinical signs because of unsatisfactory specificity and sensitivity of these biomarkers. This study aimed to elucidate the key candidate genes involved in sepsis response and explore their downstream effects based on weighted gene co-expression network analysis (WGCNA). The dataset GSE63042 with sepsis outcome information was obtained from the Gene Expression Omnibus (GEO) database and then consensus WGCNA was conducted. We identified the hub gene (stromal cell derived factor 4) from the M6 module, which was significantly associated with mortality. Subsequently, two datasets (GSE54514 and E-MTAB-4421) and cohort validation (n=89) were performed. Logistic regression analysis was used to build a prediction model and the combined score resulting in a satisfactory prognosis value (area under the ROC curve=0.908). The model was subsequently tested by another sepsis cohort (n=70, ROC= 0.925). We next demonstrated that endoplasmic reticulum (ER) stress tended to be more severe in patients PBMCs with negative outcomes compared to those with positive outcomes and was related to this phenomenon. In addition, our results indicated that adenovirus-mediated overexpression attenuated ER stress in cecal ligation and puncture (CLP) mice lung. In summary, our study indicates that incorporation of can improve clinical parameters predictive value for the prognosis of sepsis, and decreased expression levels of contributes to excessive ER stress, which is associated with worsened outcomes, whereas overexpression of attenuated such activation.
脓毒症是一种由感染引起的异质性综合征,导致高死亡率。尽管已经评估了超过 100 种用于脓毒症预后的生物标志物,但由于这些生物标志物的特异性和敏感性不理想,脓毒症患者结局的预测仍然依赖于临床体征。本研究旨在阐明脓毒症反应中涉及的关键候选基因,并基于加权基因共表达网络分析(WGCNA)探索其下游效应。从基因表达综合数据库(GEO)数据库中获取包含脓毒症结局信息的数据集 GSE63042,然后进行共识 WGCNA。我们从 M6 模块中鉴定出与死亡率显著相关的枢纽基因(基质细胞衍生因子 4)。随后,进行了两个数据集(GSE54514 和 E-MTAB-4421)和队列验证(n=89)。逻辑回归分析用于构建预测模型,组合评分得出令人满意的预后值(ROC 曲线下面积=0.908)。然后,使用另一个脓毒症队列(n=70,ROC=0.925)对该模型进行了测试。我们接下来表明,与结局阳性的患者相比,结局为阴性的患者外周血单核细胞(PBMC)中的内质网(ER)应激更严重,并且与这种现象相关。此外,我们的结果表明,腺病毒介导的过表达可减轻盲肠结扎和穿刺(CLP)小鼠肺中的 ER 应激。总之,我们的研究表明,纳入可以提高临床参数对脓毒症预后的预测价值,并且表达水平降低导致过度的 ER 应激,这与结局恶化有关,而过表达则减弱了这种激活。