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从印度尼西亚雅加达成年患者痰液样本中分离和鉴定耐奥普托欣的草绿色链球菌

Isolation and Identification of Optochin-Resistant Viridans Group Streptococci from the Sputum Samples of Adult Patients in Jakarta, Indonesia.

作者信息

Paramaiswari Wisiva Tofriska, Sidik Nurma Sumar, Khoeri Miftahuddin Majid, Tafroji Wisnu, Said Wahyu Finasari, Safari Dodi

机构信息

Eijkman Institute for Molecular Biology, Jakarta, Indonesia.

Department of Biochemistry, Bogor Agricultural University, Bogor, Indonesia.

出版信息

Int J Microbiol. 2021 Jul 14;2021:6646925. doi: 10.1155/2021/6646925. eCollection 2021.

Abstract

AIM

To investigate optochin-resistant viridans group streptococci (VGS) strains isolated from the sputum sample of adult patients with different clinical symptoms.

MATERIALS AND METHODS

Optochin-resistant VGS isolates were identified by matrix-assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS). sequencing was used to confirm identified isolates at the genus level by MALDI-TOF MS. . We identified 79% of tested isolates (148/187) at the species-level identification using the MALDI-TOF MS tool. We identified that the most common species isolated from sputum specimens were (44.9%) followed by (25.7%), (9.1%), (7.5%), (3.7%), (2.7%), and (2.1%). The strains were majority of optochin-resistant VGS isolates obtained from sputum of adult patients in Jakarta, Indonesia. MALDI-TOF MS showed potential for the rapid identification tool to identify optochin-resistant VGS isolates. Although there were discrepancies in identifying isolates at the genus/species level, the performance could be improved by expanding its database.

摘要

目的

研究从具有不同临床症状的成年患者痰液样本中分离出的对奥普托欣耐药的草绿色链球菌(VGS)菌株。

材料与方法

通过基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)鉴定对奥普托欣耐药的VGS分离株。测序用于通过MALDI-TOF MS在属水平上确认已鉴定的分离株。使用MALDI-TOF MS工具,我们在种水平鉴定中鉴定了79%的测试分离株(148/187)。我们确定从痰液标本中分离出的最常见菌种是(44.9%),其次是(25.7%)、(9.1%)、(7.5%)、(3.7%)、(2.7%)和(2.1%)。这些菌株是从印度尼西亚雅加达成年患者痰液中获得的大多数对奥普托欣耐药的VGS分离株。MALDI-TOF MS显示出作为快速鉴定工具鉴定对奥普托欣耐药的VGS分离株的潜力。尽管在属/种水平鉴定分离株存在差异,但通过扩展其数据库可以提高性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5968/8294987/282b2ce776ef/ijmicro2021-6646925.001.jpg

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